Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47075 * 2 1 4 4 C 1.52995 * 109.47366 * 119.99967 * 2 1 3 5 5 C 1.50695 * 109.47165 * 294.82664 * 4 2 1 6 6 H 1.08001 * 120.00299 * 356.08993 * 5 4 2 7 7 C 1.37880 * 119.99889 * 176.09398 * 5 4 2 8 8 N 1.31507 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47139 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47168 * 119.99542 * 9 7 5 12 12 H 1.48493 * 109.47275 * 240.00069 * 9 7 5 13 13 N 1.46902 * 109.47123 * 240.00176 * 2 1 3 14 14 C 1.46895 * 110.99955 * 186.98216 * 13 2 1 15 15 C 1.46901 * 110.99842 * 63.03314 * 13 2 1 16 16 C 1.53001 * 109.47008 * 189.99932 * 15 13 2 17 17 H 1.09009 * 115.54911 * 29.27378 * 16 15 13 18 18 C 1.52995 * 117.49975 * 243.60823 * 16 15 13 19 19 C 1.52995 * 117.50044 * 174.98071 * 16 15 13 20 20 H 1.08998 * 117.50142 * 0.02562 * 19 16 15 21 21 C 1.53002 * 117.50307 * 214.97560 * 19 16 15 22 22 H 1.09000 * 109.47147 * 299.99796 * 1 2 3 23 23 H 1.09004 * 109.47323 * 59.99886 * 1 2 3 24 24 H 1.09008 * 109.46852 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47493 * 174.82193 * 4 2 1 26 26 H 1.09007 * 109.46666 * 54.82217 * 4 2 1 27 27 H 0.97004 * 119.99682 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47286 * 66.98899 * 14 13 2 29 29 H 1.08998 * 109.47572 * 186.99169 * 14 13 2 30 30 H 1.09003 * 109.47413 * 306.99328 * 14 13 2 31 31 H 1.08999 * 109.47260 * 309.99257 * 15 13 2 32 32 H 1.08991 * 109.47611 * 69.99966 * 15 13 2 33 33 H 1.09002 * 117.49971 * 359.97438 * 18 16 15 34 34 H 1.09000 * 117.49965 * 144.99508 * 18 16 15 35 35 H 1.09008 * 109.46431 * 60.00296 * 21 19 16 36 36 H 1.08998 * 109.47598 * 179.97438 * 21 19 16 37 37 H 1.08999 * 109.47612 * 300.00766 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6451 0.0593 2.4763 6 1 1.1417 1.0092 2.3733 7 6 1.9265 -0.4394 3.7306 8 7 2.5390 -1.5963 3.8561 9 14 1.4375 0.5284 5.2517 10 1 0.7659 1.7881 4.8423 11 1 0.5064 -0.2828 6.0765 12 1 2.6508 0.8492 6.0455 13 7 2.0197 -0.6925 -1.1995 14 6 3.4785 -0.8581 -1.1530 15 6 1.6088 0.0143 -2.4200 16 6 1.9154 -0.8555 -3.6407 17 1 1.8882 -1.9318 -3.4699 18 6 2.9393 -0.3256 -4.6465 19 6 1.4523 -0.3446 -5.0065 20 1 0.9296 0.6114 -5.0355 21 6 0.9862 -1.3834 -6.0285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1261 -0.8022 1.2040 26 1 1.6029 -1.7187 1.2967 27 1 2.7366 -1.9472 4.7386 28 1 3.7407 -1.5459 -0.3490 29 1 3.8291 -1.2599 -2.1036 30 1 3.9484 0.1086 -0.9717 31 1 0.5389 0.2185 -2.3789 32 1 2.1553 0.9542 -2.4971 33 1 3.3942 0.6429 -4.4388 34 1 3.5857 -1.0532 -5.1375 35 1 0.1373 -1.9351 -5.6244 36 1 0.6874 -0.8800 -6.9480 37 1 1.8011 -2.0753 -6.2410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = 11.366145 kcal Electronic energy + Delta-G solvation = -14228.225970 eV Core-core repulsion = 12005.831829 eV Total energy + Delta-G solvation = -2222.394142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.58472 -36.65087 -33.04651 -30.92662 -28.95725 -27.74222 -26.02240 -23.95534 -22.76506 -20.91102 -20.00351 -18.88157 -16.54458 -15.42017 -14.83804 -14.64911 -14.44240 -13.66650 -13.37833 -13.13350 -13.01470 -12.28932 -12.07486 -11.89263 -11.59342 -11.34806 -11.32075 -11.16982 -10.86533 -10.72095 -10.64260 -10.35575 -9.86159 -9.83885 -9.61705 -9.08953 -9.02710 -8.31063 -7.62391 -5.97225 -3.98512 3.32287 3.39858 3.43539 3.80632 4.37710 4.52860 4.85293 4.94744 5.09836 5.27939 5.38682 5.57489 5.69059 5.73082 5.80778 5.85087 5.87926 5.97339 5.99539 6.02058 6.23165 6.29192 6.31974 6.39360 6.46284 6.60818 6.76776 6.97863 7.16042 7.61315 7.69342 7.86959 7.91033 8.11668 8.47777 9.08080 9.64461 11.14281 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068024 B = 0.005742 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.522450 B = 4875.078346 C = 5049.933654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.084 3.916 3 H 0.025 0.975 4 C 0.029 3.971 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.537 5.537 14 C 0.029 3.971 15 C 0.080 3.920 16 C -0.132 4.132 17 H 0.111 0.889 18 C -0.182 4.182 19 C -0.158 4.158 20 H 0.099 0.901 21 C -0.120 4.120 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.017 0.983 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 1.985 -15.202 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.023 4.023 3 H 0.043 0.957 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.261 5.261 14 C -0.119 4.119 15 C -0.048 4.048 16 C -0.151 4.151 17 H 0.129 0.871 18 C -0.219 4.219 19 C -0.177 4.177 20 H 0.118 0.882 21 C -0.177 4.177 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.388 1.400 -15.068 15.197 hybrid contribution 0.233 1.323 0.941 1.640 sum -1.155 2.723 -14.127 14.434 Atomic orbital electron populations 1.21756 0.95427 1.01585 0.99918 1.21851 0.94995 0.95175 0.90251 0.95732 1.19214 0.96227 0.96168 0.89218 1.21241 1.37875 1.05424 0.90906 0.92693 1.24985 0.95341 0.94998 0.99013 1.69980 1.41702 1.18500 1.23144 0.86577 0.78219 0.80151 0.83300 1.19795 1.21023 1.21100 1.62087 1.11872 1.50418 1.01755 1.22342 0.87816 1.00127 1.01630 1.21712 1.00665 0.93502 0.88927 1.22452 1.02592 1.00644 0.89400 0.87111 1.23207 0.91804 1.02519 1.04389 1.22360 0.97215 1.00764 0.97331 0.88240 1.21333 1.01127 0.97682 0.97553 0.91621 0.95030 0.92664 0.96474 0.95475 0.93116 0.90566 0.92562 0.96410 0.90426 0.95686 0.89291 0.89166 0.92178 0.92557 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.88 37.16 0.33 -2.23 16 2 C 0.08 1.82 2.07 -67.71 -0.14 1.68 16 3 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.03 0.76 4.16 -27.89 -0.12 0.64 16 5 C -0.52 -14.54 8.33 -34.44 -0.29 -14.83 16 6 H 0.05 1.51 7.22 -52.49 -0.38 1.13 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.54 -10.12 4.63 -234.89 -1.09 -11.21 16 14 C 0.03 0.52 8.71 60.06 0.52 1.05 16 15 C 0.08 1.25 5.09 -3.82 -0.02 1.23 16 16 C -0.13 -1.76 4.39 -90.62 -0.40 -2.16 16 17 H 0.11 1.58 8.14 -51.92 -0.42 1.16 16 18 C -0.18 -2.09 9.75 -26.73 -0.26 -2.35 16 19 C -0.16 -1.76 6.13 -90.62 -0.56 -2.31 16 20 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 21 C -0.12 -1.14 10.19 37.16 0.38 -0.76 16 22 H 0.06 1.36 7.05 -51.93 -0.37 0.99 16 23 H 0.03 0.53 6.27 -51.93 -0.33 0.20 16 24 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 25 H 0.02 0.47 6.17 -51.93 -0.32 0.15 16 26 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.08 1.51 6.54 -51.93 -0.34 1.17 16 29 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 30 H 0.02 0.32 8.11 -51.93 -0.42 -0.10 16 31 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 32 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 33 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -29.37 293.31 -8.16 -37.53 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.57 Total: -2.75 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.64 Total: -18.48 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.35 Total: -37.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.37 -8.16 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.900 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds