Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47075 * 2 1 4 4 C 1.52995 * 109.47366 * 119.99967 * 2 1 3 5 5 C 1.50695 * 109.47165 * 294.82664 * 4 2 1 6 6 H 1.08001 * 120.00299 * 356.08993 * 5 4 2 7 7 C 1.37880 * 119.99889 * 176.09398 * 5 4 2 8 8 N 1.31507 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47139 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47168 * 119.99542 * 9 7 5 12 12 H 1.48493 * 109.47275 * 240.00069 * 9 7 5 13 13 N 1.46902 * 109.47123 * 240.00176 * 2 1 3 14 14 C 1.46895 * 110.99955 * 186.98216 * 13 2 1 15 15 C 1.46901 * 110.99842 * 63.03314 * 13 2 1 16 16 C 1.53001 * 109.47008 * 189.99932 * 15 13 2 17 17 H 1.09009 * 115.54911 * 29.27378 * 16 15 13 18 18 C 1.52995 * 117.49975 * 243.60823 * 16 15 13 19 19 C 1.52995 * 117.50044 * 174.98071 * 16 15 13 20 20 H 1.08998 * 117.50142 * 0.02562 * 19 16 15 21 21 C 1.53002 * 117.50307 * 214.97560 * 19 16 15 22 22 H 1.09000 * 109.47147 * 299.99796 * 1 2 3 23 23 H 1.09004 * 109.47323 * 59.99886 * 1 2 3 24 24 H 1.09008 * 109.46852 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47493 * 174.82193 * 4 2 1 26 26 H 1.09007 * 109.46666 * 54.82217 * 4 2 1 27 27 H 0.97004 * 119.99682 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47286 * 66.98899 * 14 13 2 29 29 H 1.08998 * 109.47572 * 186.99169 * 14 13 2 30 30 H 1.09003 * 109.47413 * 306.99328 * 14 13 2 31 31 H 1.08999 * 109.47260 * 309.99257 * 15 13 2 32 32 H 1.08991 * 109.47611 * 69.99966 * 15 13 2 33 33 H 1.09002 * 117.49971 * 359.97438 * 18 16 15 34 34 H 1.09000 * 117.49965 * 144.99508 * 18 16 15 35 35 H 1.09008 * 109.46431 * 60.00296 * 21 19 16 36 36 H 1.08998 * 109.47598 * 179.97438 * 21 19 16 37 37 H 1.08999 * 109.47612 * 300.00766 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6451 0.0593 2.4763 6 1 1.1417 1.0092 2.3733 7 6 1.9265 -0.4394 3.7306 8 7 2.5390 -1.5963 3.8561 9 14 1.4375 0.5284 5.2517 10 1 0.7659 1.7881 4.8423 11 1 0.5064 -0.2828 6.0765 12 1 2.6508 0.8492 6.0455 13 7 2.0197 -0.6925 -1.1995 14 6 3.4785 -0.8581 -1.1530 15 6 1.6088 0.0143 -2.4200 16 6 1.9154 -0.8555 -3.6407 17 1 1.8882 -1.9318 -3.4699 18 6 2.9393 -0.3256 -4.6465 19 6 1.4523 -0.3446 -5.0065 20 1 0.9296 0.6114 -5.0355 21 6 0.9862 -1.3834 -6.0285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1261 -0.8022 1.2040 26 1 1.6029 -1.7187 1.2967 27 1 2.7366 -1.9472 4.7386 28 1 3.7407 -1.5459 -0.3490 29 1 3.8291 -1.2599 -2.1036 30 1 3.9484 0.1086 -0.9717 31 1 0.5389 0.2185 -2.3789 32 1 2.1553 0.9542 -2.4971 33 1 3.3942 0.6429 -4.4388 34 1 3.5857 -1.0532 -5.1375 35 1 0.1373 -1.9351 -5.6244 36 1 0.6874 -0.8800 -6.9480 37 1 1.8011 -2.0753 -6.2410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695837292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -5.770172 kcal Electronic energy + Delta-G solvation = -14228.969057 eV Core-core repulsion = 12005.831829 eV Total energy + Delta-G solvation = -2223.137228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84614 -37.98521 -35.08664 -32.69735 -30.09834 -29.30108 -27.55644 -25.62326 -24.51771 -21.89820 -21.05186 -20.60714 -18.66243 -16.74177 -16.47934 -16.24094 -15.95293 -15.10511 -14.77219 -14.45082 -14.11004 -13.84974 -13.59722 -13.27500 -13.09088 -13.04095 -12.75182 -12.57185 -12.41969 -12.24998 -12.12305 -12.04609 -11.73157 -11.24334 -11.11981 -10.73790 -10.53218 -10.47634 -9.15680 -8.17910 -6.27563 1.40245 1.40615 1.53572 2.41078 2.83479 3.11468 3.15769 3.84393 3.99740 4.07764 4.27253 4.35350 4.37208 4.49043 4.51694 4.63677 4.69434 4.81908 4.91519 4.93311 4.99684 5.01101 5.06858 5.10245 5.21605 5.23954 5.35598 5.43106 5.49370 5.51640 5.72221 5.80219 6.12104 6.37317 6.39986 6.88558 7.40566 8.94555 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068024 B = 0.005742 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.522450 B = 4875.078346 C = 5049.933654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.093 3.907 3 H 0.018 0.982 4 C 0.038 3.962 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.546 5.546 14 C 0.036 3.964 15 C 0.084 3.916 16 C -0.151 4.151 17 H 0.100 0.900 18 C -0.175 4.175 19 C -0.144 4.144 20 H 0.106 0.894 21 C -0.120 4.120 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.046 0.954 25 H -0.006 1.006 26 H -0.007 1.007 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.014 0.986 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 3.176 -16.427 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.015 4.015 3 H 0.036 0.964 4 C 0.001 3.999 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.270 5.270 14 C -0.113 4.113 15 C -0.043 4.043 16 C -0.169 4.169 17 H 0.118 0.882 18 C -0.212 4.212 19 C -0.162 4.162 20 H 0.124 0.876 21 C -0.177 4.177 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.075 2.599 -16.316 16.652 hybrid contribution 0.474 0.921 1.262 1.633 sum -1.601 3.520 -15.054 15.543 Atomic orbital electron populations 1.21658 0.93885 1.01369 1.00973 1.21588 0.96176 0.94105 0.89638 0.96358 1.19034 0.94586 0.94790 0.91503 1.21614 1.37789 1.05763 0.91918 0.92178 1.25921 0.95167 0.95983 1.02567 1.70117 1.42836 1.20257 1.24128 0.85435 0.78025 0.78928 0.78882 1.18539 1.20424 1.20537 1.62035 1.12203 1.50755 1.02048 1.22257 0.87615 0.99375 1.02009 1.21741 1.00717 0.93753 0.88127 1.22268 1.05499 0.99617 0.89530 0.88207 1.23274 0.92216 1.02669 1.03048 1.22470 0.96958 1.01188 0.95622 0.87589 1.21363 1.01204 0.97443 0.97688 0.92771 0.91711 0.93480 0.98764 0.98887 0.92888 0.93347 0.89849 0.96731 0.90158 0.95437 0.89107 0.88069 0.92297 0.90968 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.88 71.98 0.64 -4.09 16 2 C 0.09 4.03 2.07 44.91 0.09 4.12 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.04 2.07 4.16 29.84 0.12 2.20 16 5 C -0.53 -30.50 8.33 25.60 0.21 -30.29 16 6 H 0.06 3.31 7.22 -2.91 -0.02 3.29 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.55 -20.53 4.63 -897.06 -4.15 -24.68 16 14 C 0.04 1.30 8.71 127.69 1.11 2.41 16 15 C 0.08 2.50 5.09 86.30 0.44 2.94 16 16 C -0.15 -3.73 4.39 -10.80 -0.05 -3.78 16 17 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 18 C -0.18 -3.58 9.75 30.59 0.30 -3.28 16 19 C -0.14 -2.81 6.13 -10.79 -0.07 -2.87 16 20 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 21 C -0.12 -1.94 10.19 71.98 0.73 -1.21 16 22 H 0.05 2.21 7.05 -2.39 -0.02 2.19 16 23 H 0.06 2.07 6.27 -2.39 -0.01 2.05 16 24 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 25 H -0.01 -0.34 6.17 -2.39 -0.01 -0.36 16 26 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.05 2.01 6.54 -2.39 -0.02 1.99 16 29 H 0.08 2.53 6.93 -2.39 -0.02 2.52 16 30 H 0.01 0.52 8.11 -2.39 -0.02 0.50 16 31 H 0.08 2.32 5.95 -2.39 -0.01 2.30 16 32 H 0.03 0.81 7.85 -2.39 -0.02 0.79 16 33 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 34 H 0.10 1.85 8.05 -2.39 -0.02 1.83 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.90 7.90 -2.39 -0.02 0.88 16 Total: -1.00 -63.46 293.31 3.16 -60.30 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.01 Total: 8.25 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.00 Total: -33.31 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -3.87 Total: -81.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.46 3.16 -60.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.528 kcal (2) G-P(sol) polarization free energy of solvation -63.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds