Wall clock time and date at job start Mon Mar 30 2020 02:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 N 1.46905 * 109.47247 * 175.15712 * 3 2 1 5 5 C 1.46894 * 111.00098 * 199.62054 * 4 3 2 6 6 H 1.09002 * 109.47096 * 189.90728 * 5 4 3 7 7 C 1.52993 * 109.47553 * 309.90815 * 5 4 3 8 8 C 1.52999 * 109.46980 * 69.91182 * 5 4 3 9 9 C 1.50705 * 109.47301 * 63.21578 * 8 5 4 10 10 H 1.07997 * 119.99891 * 5.02499 * 9 8 5 11 11 C 1.37875 * 120.00043 * 185.01552 * 9 8 5 12 12 N 1.31519 * 120.00023 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00096 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47126 * 90.00017 * 13 11 9 15 15 H 1.48503 * 109.47094 * 210.00249 * 13 11 9 16 16 H 1.48503 * 109.46866 * 329.99919 * 13 11 9 17 17 C 1.46906 * 110.99525 * 75.67145 * 4 3 2 18 18 C 1.53000 * 117.49797 * 257.18223 * 17 4 3 19 19 C 1.52999 * 60.00134 * 252.51098 * 18 17 4 20 20 H 1.08994 * 109.47548 * 299.99658 * 1 2 3 21 21 H 1.09004 * 109.47157 * 60.00484 * 1 2 3 22 22 H 1.09007 * 109.46937 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47592 * 240.00546 * 2 1 3 24 24 H 1.09000 * 109.47184 * 120.00272 * 2 1 3 25 25 H 1.08999 * 109.47614 * 295.16212 * 3 2 1 26 26 H 1.09003 * 109.46937 * 55.16469 * 3 2 1 27 27 H 1.08997 * 109.47608 * 300.00084 * 7 5 4 28 28 H 1.09002 * 109.46991 * 59.99848 * 7 5 4 29 29 H 1.09000 * 109.47457 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47647 * 183.22083 * 8 5 4 31 31 H 1.09003 * 109.47284 * 303.21879 * 8 5 4 32 32 H 0.97001 * 120.00057 * 179.97438 * 12 11 9 33 33 H 1.08998 * 115.55340 * 42.88591 * 17 4 3 34 34 H 1.09007 * 117.49830 * 359.97438 * 18 17 4 35 35 H 1.08994 * 117.49815 * 145.02127 * 18 17 4 36 36 H 1.09001 * 117.49906 * 252.51646 * 19 18 17 37 37 H 1.09001 * 117.50253 * 107.48609 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5043 1.4442 0.1169 5 6 3.9938 2.7490 0.5813 6 1 5.0797 2.7825 0.4920 7 6 3.3775 3.8586 -0.2729 8 6 3.5961 2.9515 2.0448 9 6 4.2670 1.9053 2.8971 10 1 4.9752 1.2208 2.4542 11 6 3.9769 1.8223 4.2424 12 7 3.1142 2.6557 4.7818 13 14 4.8091 0.5260 5.2991 14 1 6.0692 1.0777 5.8586 15 1 3.9033 0.1363 6.4095 16 1 5.1163 -0.6665 4.4692 17 6 4.1344 1.0682 -1.1557 18 6 4.6819 -0.3552 -1.2796 19 6 5.6452 0.8266 -1.1518 20 1 -0.3634 0.5137 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.7491 1.9308 -0.9301 26 1 1.6075 1.9807 0.8435 27 1 3.6608 3.7144 -1.3155 28 1 2.2916 3.8251 -0.1836 29 1 3.7404 4.8268 0.0720 30 1 3.9091 3.9428 2.3727 31 1 2.5143 2.8611 2.1431 32 1 2.9099 2.5970 5.7282 33 1 3.6992 1.5196 -2.0473 34 1 4.5749 -1.0124 -0.4165 35 1 4.6068 -0.8404 -2.2527 36 1 6.2039 1.1188 -2.0410 37 1 6.1716 0.9467 -0.2050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:03 Heat of formation + Delta-G solvation = 12.151503 kcal Electronic energy + Delta-G solvation = -14861.009050 eV Core-core repulsion = 12638.648964 eV Total energy + Delta-G solvation = -2222.360086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.55199 -35.02843 -33.56230 -32.20536 -29.30210 -27.23531 -25.09767 -23.15357 -21.97057 -21.16536 -20.61920 -18.31714 -16.17388 -15.81363 -15.11890 -14.56664 -14.22089 -13.82495 -13.40557 -12.72235 -12.30216 -12.25308 -11.93298 -11.65897 -11.39870 -11.15847 -11.10508 -10.99916 -10.64894 -10.53180 -10.39816 -10.30500 -9.97879 -9.79979 -9.52264 -9.07267 -8.92222 -8.21724 -7.42356 -5.84902 -3.81933 3.40858 3.47060 3.52173 4.22584 4.45493 4.59759 5.33853 5.38247 5.43671 5.50225 5.52421 5.67188 5.76258 5.88281 5.93881 5.95387 5.99367 6.06613 6.15384 6.24755 6.30771 6.38136 6.44901 6.56002 6.61923 6.68495 6.80130 6.86464 7.06331 7.59771 7.75903 8.00155 8.11547 8.16862 8.62683 9.22934 9.79052 11.27197 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022810 B = 0.010518 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.258688 B = 2661.447583 C = 2823.968793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.064 3.936 4 N -0.483 5.483 5 C 0.088 3.912 6 H 0.069 0.931 7 C -0.181 4.181 8 C 0.030 3.970 9 C -0.484 4.484 10 H 0.058 0.942 11 C 0.050 3.950 12 N -0.904 5.904 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.275 1.275 17 C 0.012 3.988 18 C -0.169 4.169 19 C -0.175 4.175 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 -3.106 -11.581 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.064 4.064 4 N -0.206 5.206 5 C -0.019 4.019 6 H 0.087 0.913 7 C -0.240 4.240 8 C -0.007 4.007 9 C -0.523 4.523 10 H 0.076 0.924 11 C -0.149 4.149 12 N -0.546 5.546 13 Si 0.716 3.284 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.200 1.200 17 C -0.097 4.097 18 C -0.207 4.207 19 C -0.212 4.212 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.038 0.962 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.851 -3.414 -11.053 11.599 hybrid contribution 0.163 -0.058 0.051 0.180 sum -0.688 -3.472 -11.001 11.557 Atomic orbital electron populations 1.21736 0.96652 1.00928 1.01376 1.21456 0.94265 0.97417 1.02231 1.22074 0.88122 0.96482 0.99727 1.61900 1.04888 1.30342 1.23441 1.21917 0.98464 0.84254 0.97268 0.91297 1.22531 1.01340 1.00863 0.99235 1.19209 0.97254 0.96589 0.87697 1.21117 1.23510 1.15204 0.92459 0.92392 1.24983 0.95610 0.96078 0.98182 1.69964 1.34796 1.37749 1.12051 0.86665 0.79160 0.82418 0.80151 1.21083 1.21595 1.19951 1.22379 0.95350 0.99168 0.92841 1.22993 1.04012 0.91617 1.02041 1.22963 0.92235 1.03170 1.02864 0.92576 0.93573 0.93238 0.92899 0.90919 0.96187 0.89949 0.94346 0.92966 0.92735 0.96742 0.95963 0.93400 0.90981 0.88265 0.89858 0.89670 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.89 6.00 -26.73 -0.16 -2.05 16 3 C 0.06 1.15 3.51 -3.82 -0.01 1.14 16 4 N -0.48 -9.33 4.15 -218.72 -0.91 -10.24 16 5 C 0.09 1.83 2.21 -67.72 -0.15 1.68 16 6 H 0.07 1.46 7.08 -51.93 -0.37 1.09 16 7 C -0.18 -3.20 8.49 37.15 0.32 -2.88 16 8 C 0.03 0.76 4.43 -27.88 -0.12 0.63 16 9 C -0.48 -13.62 8.79 -34.44 -0.30 -13.93 16 10 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16 11 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 13 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.01 0.19 3.91 -67.71 -0.26 -0.07 16 18 C -0.17 -2.49 10.13 -26.73 -0.27 -2.76 16 19 C -0.17 -2.65 9.67 -26.73 -0.26 -2.91 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 23 H 0.05 0.80 7.53 -51.93 -0.39 0.41 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.02 0.33 7.24 -51.93 -0.38 -0.04 16 26 H 0.08 1.69 5.92 -51.93 -0.31 1.38 16 27 H 0.04 0.61 7.51 -51.93 -0.39 0.22 16 28 H 0.05 0.91 6.64 -51.93 -0.34 0.57 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.61 6.34 -51.93 -0.33 0.28 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 34 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 1.73 7.83 -51.93 -0.41 1.32 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -29.38 294.04 -8.38 -37.76 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.66 Total: -1.03 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -0.96 Total: -21.49 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.17 Total: -36.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.38 -8.38 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.916 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds