Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 N 1.46896 * 109.47447 * 185.32954 * 3 2 1 5 5 C 1.46903 * 111.00025 * 286.69502 * 4 3 2 6 6 H 1.09004 * 109.46845 * 54.99626 * 5 4 3 7 7 C 1.53000 * 109.46772 * 294.99724 * 5 4 3 8 8 C 1.52996 * 109.47209 * 174.99840 * 5 4 3 9 9 C 1.50701 * 109.47124 * 294.99897 * 8 5 4 10 10 H 1.08002 * 120.00259 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00149 * 179.97438 * 9 8 5 12 12 N 1.31511 * 119.99864 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47137 * 60.00381 * 13 11 9 15 15 H 1.48503 * 109.47234 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47388 * 300.00457 * 13 11 9 17 17 C 1.46901 * 111.00178 * 162.73655 * 4 3 2 18 18 C 1.52993 * 117.49624 * 9.35106 * 17 4 3 19 19 C 1.52992 * 117.49857 * 300.72631 * 17 4 3 20 20 H 1.09002 * 109.46808 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47292 * 300.00167 * 1 2 3 22 22 H 1.08999 * 109.46698 * 60.00820 * 1 2 3 23 23 H 1.09000 * 109.47292 * 239.99833 * 2 1 3 24 24 H 1.09001 * 109.46581 * 119.99710 * 2 1 3 25 25 H 1.09002 * 109.47249 * 65.32916 * 3 2 1 26 26 H 1.09007 * 109.47096 * 305.33398 * 3 2 1 27 27 H 1.09007 * 109.46922 * 180.02562 * 7 5 4 28 28 H 1.09004 * 109.47135 * 60.00570 * 7 5 4 29 29 H 1.08991 * 109.47413 * 299.99958 * 7 5 4 30 30 H 1.08995 * 109.47317 * 54.99647 * 8 5 4 31 31 H 1.09000 * 109.47215 * 175.00284 * 8 5 4 32 32 H 0.97002 * 120.00052 * 180.02562 * 12 11 9 33 33 H 1.08999 * 115.54361 * 155.05150 * 17 4 3 34 34 H 1.08999 * 117.50524 * 359.97438 * 18 17 4 35 35 H 1.09008 * 117.49928 * 145.01760 * 18 17 4 36 36 H 1.09005 * 117.49925 * 214.97704 * 19 17 4 37 37 H 1.08998 * 117.50137 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4446 -0.1286 5 6 4.1423 1.0108 1.1210 6 1 3.7475 0.0374 1.4121 7 6 3.8500 2.0303 2.2238 8 6 5.6542 0.9060 0.9112 9 6 5.9485 -0.1845 -0.0864 10 1 5.1382 -0.7470 -0.5264 11 6 7.2521 -0.4643 -0.4375 12 7 8.2388 0.2201 0.0986 13 14 7.6168 -1.8166 -1.6735 14 1 6.9581 -1.4971 -2.9655 15 1 9.0843 -1.9183 -1.8773 16 1 7.0981 -3.1098 -1.1599 17 6 3.9939 2.7669 -0.5394 18 6 2.9911 3.9224 -0.5434 19 6 3.4808 3.3298 -1.8663 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.7567 1.9280 0.9339 26 1 1.6008 1.9832 -0.8384 27 1 4.3245 1.7088 3.1510 28 1 2.7728 2.1049 2.3733 29 1 4.2447 3.0037 1.9327 30 1 6.0354 1.8552 0.5347 31 1 6.1372 0.6708 1.8595 32 1 9.1560 0.0236 -0.1486 33 1 5.0228 2.9940 -0.2605 34 1 1.9673 3.7014 -0.2416 35 1 3.3602 4.9101 -0.2670 36 1 4.1721 3.9277 -2.4603 37 1 2.7796 2.7189 -2.4347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = 18.923759 kcal Electronic energy + Delta-G solvation = -14849.999927 eV Core-core repulsion = 12627.933508 eV Total energy + Delta-G solvation = -2222.066419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99543 -34.80774 -33.74996 -32.15297 -29.33020 -27.27697 -25.32687 -23.03582 -22.01404 -21.22651 -21.05050 -17.97462 -16.17334 -15.91313 -15.36281 -14.84099 -14.28210 -13.50524 -13.31643 -12.90590 -12.52685 -12.26189 -11.87675 -11.62956 -11.47152 -11.22565 -11.21747 -10.95265 -10.72658 -10.57277 -10.50791 -10.39092 -10.06546 -9.84798 -9.63458 -9.09311 -8.94524 -8.21818 -7.29928 -5.85750 -3.83176 3.43279 3.46663 3.50740 4.25703 4.56121 4.60180 5.23572 5.31470 5.34549 5.41438 5.51788 5.52669 5.66294 5.75934 5.86723 5.94594 5.95290 6.02521 6.05255 6.16396 6.19907 6.26757 6.41103 6.49653 6.56364 6.61487 6.69059 6.73154 7.03299 7.59879 7.72958 7.93149 8.07350 8.15675 8.61371 9.22261 9.78275 11.26257 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.009754 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.967609 B = 2869.941719 C = 3142.599583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.046 3.954 4 N -0.481 5.481 5 C 0.086 3.914 6 H 0.072 0.928 7 C -0.181 4.181 8 C 0.029 3.971 9 C -0.489 4.489 10 H 0.060 0.940 11 C 0.051 3.949 12 N -0.905 5.905 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.050 3.950 18 C -0.235 4.235 19 C -0.178 4.178 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.257 0.743 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 4.090 0.292 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.082 4.082 4 N -0.201 5.201 5 C -0.021 4.021 6 H 0.091 0.909 7 C -0.240 4.240 8 C -0.008 4.008 9 C -0.527 4.527 10 H 0.078 0.922 11 C -0.149 4.149 12 N -0.546 5.546 13 Si 0.718 3.282 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.205 1.205 17 C -0.060 4.060 18 C -0.274 4.274 19 C -0.216 4.216 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.769 3.725 -0.070 12.344 hybrid contribution 0.079 -0.076 -0.136 0.174 sum -11.690 3.649 -0.206 12.248 Atomic orbital electron populations 1.21738 0.96480 1.01217 1.01149 1.21509 0.94233 0.97084 1.03033 1.22282 0.89601 0.96631 0.99674 1.61934 1.03208 1.22717 1.32278 1.21945 0.98992 0.95985 0.85221 0.90949 1.22519 0.99851 1.00970 1.00682 1.19236 0.87055 0.97556 0.96973 1.21130 0.91627 1.16866 1.23114 0.92207 1.24996 0.96593 0.96624 0.96653 1.69951 0.99050 1.41323 1.44248 0.86700 0.76677 0.82640 0.82178 1.20370 1.21701 1.20530 1.22634 0.97883 0.86459 0.99025 1.23581 1.00818 0.99478 1.03510 1.22970 1.03952 1.03583 0.91142 0.92916 0.93282 0.93115 0.91057 0.91986 0.94893 0.91597 0.92715 0.94012 0.92895 0.96244 0.96353 0.93307 0.85594 0.89093 0.89705 0.89127 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.79 5.91 -26.73 -0.16 -1.95 16 3 C 0.05 0.72 3.49 -3.83 -0.01 0.71 16 4 N -0.48 -9.23 4.37 -218.73 -0.96 -10.18 16 5 C 0.09 1.76 2.19 -67.71 -0.15 1.61 16 6 H 0.07 1.51 6.71 -51.93 -0.35 1.17 16 7 C -0.18 -3.17 8.68 37.16 0.32 -2.85 16 8 C 0.03 0.73 4.33 -27.88 -0.12 0.61 16 9 C -0.49 -13.75 8.84 -34.44 -0.30 -14.06 16 10 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 11 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 13 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.05 0.91 4.38 -67.72 -0.30 0.61 16 18 C -0.23 -3.49 9.55 -26.73 -0.26 -3.75 16 19 C -0.18 -2.85 9.93 -26.73 -0.27 -3.11 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 0.97 6.94 -51.93 -0.36 0.61 16 25 H 0.03 0.50 5.74 -51.93 -0.30 0.21 16 26 H 0.07 0.99 5.71 -51.92 -0.30 0.69 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.65 6.28 -51.93 -0.33 0.33 16 29 H 0.05 0.92 7.15 -51.93 -0.37 0.55 16 30 H 0.02 0.52 5.98 -51.93 -0.31 0.21 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.13 2.60 5.95 -51.93 -0.31 2.29 16 34 H 0.09 1.28 5.99 -51.93 -0.31 0.97 16 35 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.41 7.53 -51.93 -0.39 1.02 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -29.31 286.34 -8.14 -37.45 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.24 Total: -0.01 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -0.97 Total: -22.18 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.22 Total: -36.83 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.31 -8.14 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.372 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds