Wall clock time and date at job start Mon Mar 30 2020 02:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 N 1.46896 * 109.47447 * 185.32954 * 3 2 1 5 5 C 1.46903 * 111.00025 * 286.69502 * 4 3 2 6 6 H 1.09004 * 109.46845 * 54.99626 * 5 4 3 7 7 C 1.53000 * 109.46772 * 294.99724 * 5 4 3 8 8 C 1.52996 * 109.47209 * 174.99840 * 5 4 3 9 9 C 1.50701 * 109.47124 * 294.99897 * 8 5 4 10 10 H 1.08002 * 120.00259 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00149 * 179.97438 * 9 8 5 12 12 N 1.31511 * 119.99864 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47137 * 60.00381 * 13 11 9 15 15 H 1.48503 * 109.47234 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47388 * 300.00457 * 13 11 9 17 17 C 1.46901 * 111.00178 * 162.73655 * 4 3 2 18 18 C 1.52993 * 117.49624 * 9.35106 * 17 4 3 19 19 C 1.52992 * 117.49857 * 300.72631 * 17 4 3 20 20 H 1.09002 * 109.46808 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47292 * 300.00167 * 1 2 3 22 22 H 1.08999 * 109.46698 * 60.00820 * 1 2 3 23 23 H 1.09000 * 109.47292 * 239.99833 * 2 1 3 24 24 H 1.09001 * 109.46581 * 119.99710 * 2 1 3 25 25 H 1.09002 * 109.47249 * 65.32916 * 3 2 1 26 26 H 1.09007 * 109.47096 * 305.33398 * 3 2 1 27 27 H 1.09007 * 109.46922 * 180.02562 * 7 5 4 28 28 H 1.09004 * 109.47135 * 60.00570 * 7 5 4 29 29 H 1.08991 * 109.47413 * 299.99958 * 7 5 4 30 30 H 1.08995 * 109.47317 * 54.99647 * 8 5 4 31 31 H 1.09000 * 109.47215 * 175.00284 * 8 5 4 32 32 H 0.97002 * 120.00052 * 180.02562 * 12 11 9 33 33 H 1.08999 * 115.54361 * 155.05150 * 17 4 3 34 34 H 1.08999 * 117.50524 * 359.97438 * 18 17 4 35 35 H 1.09008 * 117.49928 * 145.01760 * 18 17 4 36 36 H 1.09005 * 117.49925 * 214.97704 * 19 17 4 37 37 H 1.08998 * 117.50137 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4446 -0.1286 5 6 4.1423 1.0108 1.1210 6 1 3.7475 0.0374 1.4121 7 6 3.8500 2.0303 2.2238 8 6 5.6542 0.9060 0.9112 9 6 5.9485 -0.1845 -0.0864 10 1 5.1382 -0.7470 -0.5264 11 6 7.2521 -0.4643 -0.4375 12 7 8.2388 0.2201 0.0986 13 14 7.6168 -1.8166 -1.6735 14 1 6.9581 -1.4971 -2.9655 15 1 9.0843 -1.9183 -1.8773 16 1 7.0981 -3.1098 -1.1599 17 6 3.9939 2.7669 -0.5394 18 6 2.9911 3.9224 -0.5434 19 6 3.4808 3.3298 -1.8663 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.7567 1.9280 0.9339 26 1 1.6008 1.9832 -0.8384 27 1 4.3245 1.7088 3.1510 28 1 2.7728 2.1049 2.3733 29 1 4.2447 3.0037 1.9327 30 1 6.0354 1.8552 0.5347 31 1 6.1372 0.6708 1.8595 32 1 9.1560 0.0236 -0.1486 33 1 5.0228 2.9940 -0.2605 34 1 1.9673 3.7014 -0.2416 35 1 3.3602 4.9101 -0.2670 36 1 4.1721 3.9277 -2.4603 37 1 2.7796 2.7189 -2.4347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695837828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:05 Heat of formation + Delta-G solvation = 1.751408 kcal Electronic energy + Delta-G solvation = -14850.744576 eV Core-core repulsion = 12627.933508 eV Total energy + Delta-G solvation = -2222.811068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40776 -36.28869 -35.25472 -34.03026 -30.84223 -29.10274 -26.63081 -24.92161 -23.28335 -22.75057 -22.33186 -19.46031 -18.32047 -17.38677 -16.86067 -16.38197 -15.93994 -14.78847 -14.71168 -14.48738 -13.94057 -13.71612 -13.64852 -13.22040 -12.88856 -12.76574 -12.56070 -12.48376 -12.37064 -12.22827 -11.98978 -11.85897 -11.46869 -11.37474 -11.03269 -11.00254 -10.91281 -10.44830 -8.69959 -8.08845 -6.13226 1.41333 1.44171 1.51535 2.47900 2.91866 3.20922 3.28435 4.00186 4.03864 4.11998 4.19049 4.30720 4.39235 4.51297 4.57156 4.62743 4.69531 4.75804 4.79053 4.93964 4.98865 5.09288 5.17642 5.22295 5.23606 5.27561 5.29877 5.38945 5.52626 5.54290 5.73186 5.92228 6.35609 6.49462 6.58868 7.00090 7.52173 9.02929 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.009754 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.967609 B = 2869.941719 C = 3142.599583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.049 3.951 4 N -0.501 5.501 5 C 0.096 3.904 6 H 0.065 0.935 7 C -0.170 4.170 8 C 0.035 3.965 9 C -0.497 4.497 10 H 0.056 0.944 11 C -0.005 4.005 12 N -0.940 5.940 13 Si 0.955 3.045 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.270 1.270 17 C 0.016 3.984 18 C -0.202 4.202 19 C -0.174 4.174 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.049 0.951 30 H -0.002 1.002 31 H -0.010 1.010 32 H 0.258 0.742 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 4.284 -0.274 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.222 5.222 5 C -0.012 4.012 6 H 0.083 0.917 7 C -0.229 4.229 8 C -0.002 4.002 9 C -0.536 4.536 10 H 0.074 0.926 11 C -0.201 4.201 12 N -0.582 5.582 13 Si 0.781 3.219 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.093 4.093 18 C -0.241 4.241 19 C -0.212 4.212 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.008 0.992 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.903 3.921 -0.637 14.459 hybrid contribution 0.745 -0.109 0.041 0.754 sum -13.158 3.812 -0.597 13.712 Atomic orbital electron populations 1.21674 0.93704 1.02196 1.02216 1.21496 0.96603 0.96218 1.01468 1.22352 0.87320 0.97422 1.00686 1.61857 1.05234 1.23658 1.31472 1.21599 0.95497 0.96848 0.87244 0.91670 1.22375 1.01472 0.99724 0.99348 1.19088 0.90748 0.95651 0.94703 1.21438 0.91598 1.17234 1.23300 0.92604 1.25835 0.96554 0.99041 0.98651 1.70083 0.99356 1.43014 1.45786 0.85656 0.76566 0.79950 0.79749 1.19836 1.21286 1.19506 1.22463 0.97383 0.87703 1.01783 1.23589 1.00409 0.98482 1.01580 1.23043 1.03878 1.03301 0.91005 0.92082 0.92085 0.92116 0.93025 0.93223 0.93756 0.90300 0.92741 0.91430 0.93143 0.98345 0.99176 0.93313 0.89017 0.87448 0.88351 0.88549 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.16 16 2 C -0.12 -3.37 5.91 30.60 0.18 -3.19 16 3 C 0.05 1.44 3.49 86.30 0.30 1.75 16 4 N -0.50 -18.98 4.37 -845.93 -3.69 -22.67 16 5 C 0.10 3.97 2.19 44.91 0.10 4.07 16 6 H 0.07 2.76 6.71 -2.39 -0.02 2.74 16 7 C -0.17 -5.82 8.68 71.98 0.62 -5.20 16 8 C 0.04 1.86 4.33 29.85 0.13 1.99 16 9 C -0.50 -28.68 8.84 25.60 0.23 -28.46 16 10 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 11 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 12 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 13 Si 0.95 46.20 29.54 68.60 2.03 48.23 16 14 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.02 0.59 4.38 44.91 0.20 0.79 16 18 C -0.20 -5.47 9.55 30.59 0.29 -5.17 16 19 C -0.17 -5.27 9.93 30.59 0.30 -4.97 16 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.50 6.94 -2.39 -0.02 1.48 16 25 H 0.04 1.21 5.74 -2.39 -0.01 1.19 16 26 H 0.08 2.11 5.71 -2.38 -0.01 2.10 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 1.95 6.28 -2.38 -0.01 1.93 16 29 H 0.05 1.73 7.15 -2.39 -0.02 1.72 16 30 H 0.00 -0.09 5.98 -2.39 -0.01 -0.11 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.09 3.94 5.95 -2.39 -0.01 3.93 16 34 H 0.11 2.59 5.99 -2.39 -0.01 2.57 16 35 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.09 2.77 7.53 -2.39 -0.02 2.75 16 Total: -1.00 -63.80 286.34 3.17 -60.63 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.02 Total: 12.31 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 3.53 Total: -40.39 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.41 Total: -80.78 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -63.80 3.17 -60.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.382 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds