Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46753 * 2 1 4 4 C 1.52999 * 109.46906 * 119.99703 * 2 1 3 5 5 C 1.50696 * 109.47023 * 188.80435 * 4 2 1 6 6 H 1.08000 * 120.00345 * 5.57367 * 5 4 2 7 7 C 1.37878 * 120.00163 * 185.84499 * 5 4 2 8 8 N 1.31517 * 120.00420 * 179.72216 * 7 5 4 9 9 Si 1.86800 * 119.99791 * 359.73007 * 7 5 4 10 10 H 1.48503 * 109.47294 * 89.99697 * 9 7 5 11 11 H 1.48495 * 109.47047 * 209.99388 * 9 7 5 12 12 H 1.48502 * 109.47154 * 329.99767 * 9 7 5 13 13 N 1.46900 * 109.47311 * 240.00059 * 2 1 3 14 14 C 1.48527 * 110.99884 * 180.36096 * 13 2 1 15 15 C 1.54942 * 103.22277 * 200.27620 * 14 13 2 16 16 C 1.54592 * 102.92286 * 37.41684 * 15 14 13 17 17 C 1.47903 * 111.00160 * 62.95702 * 13 2 1 18 18 C 1.52995 * 109.91793 * 265.20073 * 17 13 2 19 19 C 1.53003 * 109.91482 * 26.49836 * 17 13 2 20 20 H 1.08996 * 109.47623 * 300.68719 * 1 2 3 21 21 H 1.09003 * 109.47010 * 60.68521 * 1 2 3 22 22 H 1.09004 * 109.47116 * 180.68558 * 1 2 3 23 23 H 1.08999 * 109.46714 * 68.80554 * 4 2 1 24 24 H 1.08998 * 109.47091 * 308.80719 * 4 2 1 25 25 H 0.96993 * 119.99996 * 180.02562 * 8 7 5 26 26 H 1.08996 * 110.66919 * 318.70632 * 14 13 2 27 27 H 1.09002 * 110.66853 * 81.84316 * 14 13 2 28 28 H 1.09007 * 110.72176 * 155.77400 * 15 14 13 29 29 H 1.09002 * 110.72493 * 279.05004 * 15 14 13 30 30 H 1.08995 * 110.31326 * 96.95467 * 16 15 14 31 31 H 1.09001 * 110.30811 * 219.02834 * 16 15 14 32 32 H 1.08998 * 109.47304 * 60.00252 * 18 17 13 33 33 H 1.09005 * 109.46549 * 180.02562 * 18 17 13 34 34 H 1.08996 * 109.47076 * 299.99574 * 18 17 13 35 35 H 1.08998 * 109.47286 * 64.39109 * 19 17 13 36 36 H 1.08999 * 109.46882 * 184.39773 * 19 17 13 37 37 H 1.09002 * 109.46778 * 304.39247 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5311 -0.5357 1.3629 6 1 4.0490 0.1122 0.6711 7 6 4.2353 -1.1973 2.3465 8 7 5.5374 -1.0397 2.4422 9 14 3.3397 -2.3179 3.5430 10 1 3.2971 -3.6966 2.9929 11 1 4.0556 -2.3260 4.8440 12 1 1.9543 -1.8219 3.7433 13 7 2.0197 -0.6925 -1.1994 14 6 3.5045 -0.7198 -1.2293 15 6 3.8242 -0.9775 -2.7233 16 6 2.7382 -0.1566 -3.4559 17 6 1.6046 0.0181 -2.4284 18 6 0.3106 -0.5917 -2.9711 19 6 1.3988 1.5039 -2.1270 20 1 -0.3634 0.5244 0.8837 21 1 -0.3633 0.5032 -0.8961 22 1 -0.3633 -1.0276 0.0123 23 1 1.8107 -1.7842 1.1741 24 1 1.5539 -0.3062 2.1322 25 1 6.0328 -1.5055 3.1339 26 1 3.9134 0.2381 -0.9081 27 1 3.8869 -1.5302 -0.6087 28 1 4.8196 -0.6105 -2.9736 29 1 3.7320 -2.0375 -2.9603 30 1 3.1337 0.8151 -3.7517 31 1 2.3784 -0.6999 -4.3296 32 1 -0.4756 -0.5022 -2.2214 33 1 0.0117 -0.0632 -3.8764 34 1 0.4740 -1.6442 -3.2024 35 1 2.3495 1.9508 -1.8362 36 1 1.0184 2.0058 -3.0166 37 1 0.6818 1.6137 -1.3134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = 10.730885 kcal Electronic energy + Delta-G solvation = -15381.271514 eV Core-core repulsion = 13158.849826 eV Total energy + Delta-G solvation = -2222.421689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60756 -34.36100 -32.66284 -31.68457 -28.65150 -27.67795 -27.01319 -24.80733 -22.60610 -20.59718 -19.87694 -17.97231 -16.56655 -15.52426 -15.10250 -14.45603 -13.88126 -13.51440 -12.83503 -12.69093 -12.64568 -12.34771 -12.06622 -11.84894 -11.52235 -11.25451 -11.09208 -10.89871 -10.79827 -10.51710 -10.30809 -10.17102 -10.02717 -9.94591 -9.72802 -9.22686 -8.80710 -8.45149 -7.48978 -5.98662 -3.93425 3.35394 3.42674 3.47264 4.50644 4.67030 5.08826 5.22110 5.35056 5.37784 5.66965 5.75898 5.80515 5.86674 5.89270 5.95883 6.04269 6.12606 6.18592 6.24393 6.33865 6.35230 6.43748 6.48562 6.59714 6.69710 6.81736 6.87013 6.92802 7.25407 7.33126 7.40468 7.79309 7.91557 8.08960 8.57675 9.03578 9.63511 11.13028 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037696 B = 0.010855 C = 0.009408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.597732 B = 2578.853210 C = 2975.599217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.009 4.009 5 C -0.520 4.520 6 H 0.084 0.916 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.497 5.497 14 C 0.058 3.942 15 C -0.134 4.134 16 C -0.120 4.120 17 C 0.084 3.916 18 C -0.133 4.133 19 C -0.179 4.179 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.016 0.984 25 H 0.261 0.739 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 1.912 -9.496 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 H 0.059 0.941 4 C -0.047 4.047 5 C -0.558 4.558 6 H 0.102 0.898 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.222 5.222 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.006 4.006 18 C -0.190 4.190 19 C -0.238 4.238 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.158 1.330 -9.353 12.481 hybrid contribution 0.027 0.240 0.739 0.778 sum -8.131 1.569 -8.613 11.948 Atomic orbital electron populations 1.22253 0.96771 1.01653 1.00570 1.21721 0.92916 0.96368 0.91613 0.94145 1.19638 0.97159 0.95986 0.91891 1.21481 0.90820 1.27930 1.15531 0.89817 1.24979 0.94653 0.96575 0.97188 1.69905 1.06470 1.43712 1.34331 0.86826 0.80343 0.81637 0.80754 1.20398 1.21750 1.19264 1.64862 1.09830 1.47466 1.00041 1.23565 0.87249 1.02662 0.93445 1.22662 0.97417 0.99755 0.97428 1.22485 0.95920 0.99786 0.97630 1.21748 0.95067 0.91780 0.92029 1.21956 0.96808 1.00635 0.99636 1.22675 1.02344 0.96910 1.01825 0.93219 0.92315 0.92519 0.96008 0.96598 0.92907 0.93267 0.87615 0.92034 0.91703 0.92274 0.92003 0.91972 0.93636 0.92464 0.92784 0.93281 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 7.50 37.16 0.28 -2.34 16 2 C 0.08 1.66 1.62 -67.71 -0.11 1.55 16 3 H 0.04 0.85 6.18 -51.93 -0.32 0.53 16 4 C -0.01 -0.22 3.61 -27.89 -0.10 -0.32 16 5 C -0.52 -14.22 6.98 -34.44 -0.24 -14.46 16 6 H 0.08 2.41 5.16 -52.49 -0.27 2.14 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 9 Si 0.88 21.93 27.36 -169.99 -4.65 17.28 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.52 6.71 56.52 0.38 -6.14 16 13 N -0.50 -9.63 4.76 -207.15 -0.99 -10.61 16 14 C 0.06 1.20 4.54 -1.90 -0.01 1.19 16 15 C -0.13 -2.26 7.06 -24.87 -0.18 -2.44 16 16 C -0.12 -1.80 6.21 -25.38 -0.16 -1.95 16 17 C 0.08 1.34 0.72 -130.53 -0.09 1.24 16 18 C -0.13 -1.86 8.32 37.16 0.31 -1.55 16 19 C -0.18 -2.71 6.84 37.16 0.25 -2.45 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.87 3.81 -51.93 -0.20 0.68 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.02 0.54 7.25 -51.93 -0.38 0.16 16 24 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.05 1.11 6.17 -51.93 -0.32 0.79 16 27 H 0.11 2.55 6.60 -51.93 -0.34 2.21 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.83 7.68 -51.93 -0.40 0.44 16 31 H 0.06 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.06 0.87 5.22 -51.93 -0.27 0.59 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.13 4.22 -51.93 -0.22 0.91 16 LS Contribution 266.64 15.07 4.02 4.02 Total: -1.00 -28.80 266.64 -7.03 -35.82 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.04 Total: -0.19 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -0.14 Total: -19.72 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.21 Total: -37.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.65 Total: 17.28 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.80 -7.03 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.555 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds