Wall clock time and date at job start Mon Mar 30 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47099 * 2 1 4 4 C 1.52994 * 109.46710 * 240.00081 * 2 1 3 5 5 C 1.50705 * 109.47018 * 172.71970 * 4 2 1 6 6 H 1.08002 * 119.99590 * 4.05171 * 5 4 2 7 7 C 1.37873 * 120.00166 * 184.05278 * 5 4 2 8 8 N 1.31512 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99869 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47191 * 60.00059 * 9 7 5 11 11 H 1.48497 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46904 * 299.99713 * 9 7 5 13 13 N 1.46895 * 109.46954 * 120.00289 * 2 1 3 14 14 C 1.47480 * 110.99860 * 302.63036 * 13 2 1 15 15 H 1.09001 * 113.48079 * 106.53244 * 14 13 2 16 16 C 1.52998 * 113.47654 * 336.06065 * 14 13 2 17 17 C 1.53516 * 87.93374 * 221.29636 * 14 13 2 18 18 C 1.47479 * 111.00030 * 206.65762 * 13 2 1 19 19 C 1.52994 * 113.47753 * 253.46889 * 18 13 2 20 20 C 1.53004 * 113.47332 * 23.87641 * 18 13 2 21 21 H 1.08998 * 109.47773 * 184.23346 * 1 2 3 22 22 H 1.09002 * 109.47405 * 304.23740 * 1 2 3 23 23 H 1.09005 * 109.47453 * 64.23399 * 1 2 3 24 24 H 1.09000 * 109.47252 * 292.71405 * 4 2 1 25 25 H 1.09002 * 109.47663 * 52.72114 * 4 2 1 26 26 H 0.97005 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47274 * 22.86128 * 16 14 13 28 28 H 1.09010 * 109.46705 * 142.85568 * 16 14 13 29 29 H 1.09000 * 109.47680 * 262.85096 * 16 14 13 30 30 H 1.08993 * 114.17440 * 272.38324 * 17 14 13 31 31 H 1.08997 * 114.34711 * 139.67728 * 17 14 13 32 32 H 1.09005 * 109.46983 * 63.15541 * 19 18 13 33 33 H 1.09002 * 109.47127 * 183.15008 * 19 18 13 34 34 H 1.08995 * 109.47487 * 303.14765 * 19 18 13 35 35 H 1.09004 * 109.47185 * 67.81482 * 20 18 13 36 36 H 1.09005 * 109.47105 * 187.81098 * 20 18 13 37 37 H 1.09000 * 109.47238 * 307.81605 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5361 -0.5672 -1.3426 6 1 4.0778 -0.0672 -0.5533 7 6 4.2135 -1.0646 -2.4357 8 7 3.5539 -1.6739 -3.3966 9 14 6.0681 -0.8731 -2.5517 10 1 6.7088 -1.5484 -1.3949 11 1 6.5511 -1.4878 -3.8142 12 1 6.4184 0.5699 -2.5387 13 7 2.0196 -0.6925 1.1994 14 6 1.4958 -0.0613 2.4250 15 1 0.7209 -0.6478 2.9185 16 6 1.0987 1.4039 2.2340 17 6 2.8880 -0.2415 3.0462 18 6 3.3559 -0.2017 1.5846 19 6 4.4809 -1.1920 1.2776 20 6 3.6560 1.2104 1.0776 21 1 -0.3634 -1.0248 0.0759 22 1 -0.3634 0.5782 0.8496 23 1 -0.3634 0.4467 -0.9255 24 1 1.7868 -1.7796 -1.1865 25 1 1.5741 -0.2881 -2.1345 26 1 4.0306 -2.0241 -4.1654 27 1 0.8946 1.5906 1.1797 28 1 0.2049 1.6174 2.8204 29 1 1.9133 2.0475 2.5661 30 1 3.0369 -1.2036 3.5363 31 1 3.2253 0.6039 3.6459 32 1 4.5401 -1.3523 0.2010 33 1 5.4277 -0.7894 1.6376 34 1 4.2765 -2.1399 1.7754 35 1 3.0124 1.9251 1.5906 36 1 4.6998 1.4536 1.2763 37 1 3.4695 1.2585 0.0047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695903687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:26 Heat of formation + Delta-G solvation = 69.166041 kcal Electronic energy + Delta-G solvation = -15686.431988 eV Core-core repulsion = 13466.544238 eV Total energy + Delta-G solvation = -2219.887750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03301 -34.04991 -32.70384 -31.05323 -28.80202 -26.93683 -26.84014 -25.68744 -23.02051 -20.50113 -19.65622 -17.11365 -16.59540 -15.72702 -14.99454 -14.89610 -14.16150 -13.55328 -12.58665 -12.22912 -12.12286 -11.91194 -11.81270 -11.78750 -11.48868 -11.25593 -11.19382 -10.80318 -10.69670 -10.68504 -10.46749 -10.33944 -9.92670 -9.53929 -9.25630 -9.01180 -8.43408 -8.28121 -7.83988 -5.94003 -3.90630 3.33855 3.39310 3.40971 4.48559 4.64068 4.96593 5.29221 5.40639 5.49671 5.58032 5.66543 5.83182 5.91816 5.96038 6.10050 6.14113 6.16503 6.26179 6.31882 6.39520 6.47689 6.55590 6.62350 6.70675 6.78506 6.83945 7.00908 7.10949 7.37691 7.56891 7.73917 7.80810 8.08521 8.20832 8.51368 9.12089 9.67521 11.17844 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035998 B = 0.012546 C = 0.010438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.640491 B = 2231.277737 C = 2681.882623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.034 3.966 3 H 0.059 0.941 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.091 0.909 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.439 5.439 14 C 0.017 3.983 15 H 0.079 0.921 16 C -0.184 4.184 17 C -0.144 4.144 18 C 0.078 3.922 19 C -0.161 4.161 20 C -0.194 4.194 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.258 0.742 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 5.127 10.117 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.108 0.892 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.162 5.162 14 C -0.092 4.092 15 H 0.098 0.902 16 C -0.242 4.242 17 C -0.182 4.182 18 C -0.012 4.012 19 C -0.218 4.218 20 C -0.251 4.251 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.315 4.312 9.754 10.913 hybrid contribution 1.121 0.826 -0.071 1.394 sum -1.194 5.138 9.683 11.027 Atomic orbital electron populations 1.22152 0.96794 1.01649 1.00631 1.22501 0.93085 0.98042 0.93818 0.92359 1.19058 0.95681 0.95865 0.89669 1.21940 0.93138 1.36349 1.05152 0.89187 1.25006 0.97604 0.95744 0.96007 1.69965 1.35389 1.38573 1.09436 0.86913 0.86805 0.78397 0.77506 1.19915 1.21451 1.20295 1.69280 1.02773 1.44268 0.99841 1.23066 0.96933 0.94011 0.95223 0.90241 1.22802 1.00878 0.96384 1.04089 1.23481 0.96483 1.01466 0.96741 1.22205 0.92508 0.94238 0.92256 1.22386 0.94557 0.97045 1.07809 1.22897 1.01196 0.95653 1.05396 0.92760 0.93136 0.92933 0.96169 0.96342 0.93177 0.89439 0.93141 0.91864 0.89903 0.91834 0.86248 0.94611 0.93712 0.91945 0.93056 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.41 37.16 0.31 -2.46 16 2 C 0.03 0.69 1.48 -67.72 -0.10 0.59 16 3 H 0.06 1.18 3.59 -51.93 -0.19 1.00 16 4 C 0.03 0.88 4.64 -27.88 -0.13 0.75 16 5 C -0.53 -13.99 5.67 -34.44 -0.20 -14.18 16 6 H 0.09 2.21 2.24 -52.49 -0.12 2.10 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 9 Si 0.88 21.20 29.20 -169.99 -4.96 16.24 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.44 -8.66 5.92 -212.67 -1.26 -9.92 16 14 C 0.02 0.28 4.07 -71.43 -0.29 -0.01 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.18 -2.60 6.86 37.16 0.26 -2.34 16 17 C -0.14 -2.26 7.15 -26.19 -0.19 -2.44 16 18 C 0.08 1.46 0.79 -135.32 -0.11 1.35 16 19 C -0.16 -3.26 8.80 37.15 0.33 -2.93 16 20 C -0.19 -3.47 6.80 37.16 0.25 -3.21 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.78 5.25 -51.93 -0.27 0.51 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.09 1.34 3.71 -51.93 -0.19 1.15 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.85 5.47 -51.93 -0.28 0.56 16 30 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16 32 H 0.12 2.83 4.00 -51.93 -0.21 2.63 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.06 0.97 4.17 -51.93 -0.22 0.76 16 36 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.11 2.18 4.01 -51.93 -0.21 1.98 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -28.53 259.61 -6.98 -35.50 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.44 Total: 3.54 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 0.04 Total: -23.38 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.52 Total: -35.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.96 Total: 16.24 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.53 -6.98 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.669 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds