Wall clock time and date at job start Mon Mar 30 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47099 * 2 1 4 4 C 1.52994 * 109.46710 * 240.00081 * 2 1 3 5 5 C 1.50705 * 109.47018 * 172.71970 * 4 2 1 6 6 H 1.08002 * 119.99590 * 4.05171 * 5 4 2 7 7 C 1.37873 * 120.00166 * 184.05278 * 5 4 2 8 8 N 1.31512 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99869 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47191 * 60.00059 * 9 7 5 11 11 H 1.48497 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46904 * 299.99713 * 9 7 5 13 13 N 1.46895 * 109.46954 * 120.00289 * 2 1 3 14 14 C 1.47480 * 110.99860 * 302.63036 * 13 2 1 15 15 H 1.09001 * 113.48079 * 106.53244 * 14 13 2 16 16 C 1.52998 * 113.47654 * 336.06065 * 14 13 2 17 17 C 1.53516 * 87.93374 * 221.29636 * 14 13 2 18 18 C 1.47479 * 111.00030 * 206.65762 * 13 2 1 19 19 C 1.52994 * 113.47753 * 253.46889 * 18 13 2 20 20 C 1.53004 * 113.47332 * 23.87641 * 18 13 2 21 21 H 1.08998 * 109.47773 * 184.23346 * 1 2 3 22 22 H 1.09002 * 109.47405 * 304.23740 * 1 2 3 23 23 H 1.09005 * 109.47453 * 64.23399 * 1 2 3 24 24 H 1.09000 * 109.47252 * 292.71405 * 4 2 1 25 25 H 1.09002 * 109.47663 * 52.72114 * 4 2 1 26 26 H 0.97005 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47274 * 22.86128 * 16 14 13 28 28 H 1.09010 * 109.46705 * 142.85568 * 16 14 13 29 29 H 1.09000 * 109.47680 * 262.85096 * 16 14 13 30 30 H 1.08993 * 114.17440 * 272.38324 * 17 14 13 31 31 H 1.08997 * 114.34711 * 139.67728 * 17 14 13 32 32 H 1.09005 * 109.46983 * 63.15541 * 19 18 13 33 33 H 1.09002 * 109.47127 * 183.15008 * 19 18 13 34 34 H 1.08995 * 109.47487 * 303.14765 * 19 18 13 35 35 H 1.09004 * 109.47185 * 67.81482 * 20 18 13 36 36 H 1.09005 * 109.47105 * 187.81098 * 20 18 13 37 37 H 1.09000 * 109.47238 * 307.81605 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5361 -0.5672 -1.3426 6 1 4.0778 -0.0672 -0.5533 7 6 4.2135 -1.0646 -2.4357 8 7 3.5539 -1.6739 -3.3966 9 14 6.0681 -0.8731 -2.5517 10 1 6.7088 -1.5484 -1.3949 11 1 6.5511 -1.4878 -3.8142 12 1 6.4184 0.5699 -2.5387 13 7 2.0196 -0.6925 1.1994 14 6 1.4958 -0.0613 2.4250 15 1 0.7209 -0.6478 2.9185 16 6 1.0987 1.4039 2.2340 17 6 2.8880 -0.2415 3.0462 18 6 3.3559 -0.2017 1.5846 19 6 4.4809 -1.1920 1.2776 20 6 3.6560 1.2104 1.0776 21 1 -0.3634 -1.0248 0.0759 22 1 -0.3634 0.5782 0.8496 23 1 -0.3634 0.4467 -0.9255 24 1 1.7868 -1.7796 -1.1865 25 1 1.5741 -0.2881 -2.1345 26 1 4.0306 -2.0241 -4.1654 27 1 0.8946 1.5906 1.1797 28 1 0.2049 1.6174 2.8204 29 1 1.9133 2.0475 2.5661 30 1 3.0369 -1.2036 3.5363 31 1 3.2253 0.6039 3.6459 32 1 4.5401 -1.3523 0.2010 33 1 5.4277 -0.7894 1.6376 34 1 4.2765 -2.1399 1.7754 35 1 3.0124 1.9251 1.5906 36 1 4.6998 1.4536 1.2763 37 1 3.4695 1.2585 0.0047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695903687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:26 Heat of formation + Delta-G solvation = 49.916731 kcal Electronic energy + Delta-G solvation = -15687.266701 eV Core-core repulsion = 13466.544238 eV Total energy + Delta-G solvation = -2220.722463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.44595 -35.87058 -34.42346 -32.71192 -30.11724 -28.81163 -28.31383 -27.07991 -24.95935 -21.84927 -21.25449 -18.66580 -18.50938 -17.17502 -16.70664 -16.24311 -15.87932 -15.14580 -14.14314 -14.01368 -13.75319 -13.41909 -13.33125 -13.25224 -13.06078 -12.82857 -12.74691 -12.53360 -12.44310 -12.27913 -11.93836 -11.83330 -11.55548 -11.03680 -10.86939 -10.71241 -10.43826 -10.22887 -9.32486 -8.08634 -6.09651 1.39897 1.41793 1.47726 2.45207 3.21219 3.30723 3.67020 4.01219 4.15089 4.28680 4.41209 4.44651 4.46733 4.54201 4.74719 4.81422 4.87466 4.93613 5.01303 5.04512 5.12028 5.14454 5.20159 5.26908 5.31105 5.38202 5.47607 5.60061 5.64009 5.74159 5.79967 5.96362 6.06391 6.41640 6.62689 7.02276 7.52480 9.04667 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035998 B = 0.012546 C = 0.010438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.640491 B = 2231.277737 C = 2681.882623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 H 0.067 0.933 4 C 0.039 3.961 5 C -0.522 4.522 6 H 0.113 0.887 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.938 3.062 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.471 5.471 14 C 0.020 3.980 15 H 0.087 0.913 16 C -0.181 4.181 17 C -0.126 4.126 18 C 0.064 3.936 19 C -0.162 4.162 20 C -0.191 4.191 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.050 0.950 24 H -0.022 1.022 25 H -0.013 1.013 26 H 0.255 0.745 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 6.895 12.837 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 H 0.085 0.915 4 C 0.001 3.999 5 C -0.559 4.559 6 H 0.130 0.870 7 C -0.200 4.200 8 N -0.584 5.584 9 Si 0.763 3.237 10 H -0.188 1.188 11 H -0.220 1.220 12 H -0.189 1.189 13 N -0.194 5.194 14 C -0.089 4.089 15 H 0.105 0.895 16 C -0.239 4.239 17 C -0.164 4.164 18 C -0.026 4.026 19 C -0.219 4.219 20 C -0.248 4.248 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.069 0.931 24 H -0.004 1.004 25 H 0.005 0.995 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.823 6.095 12.499 14.025 hybrid contribution 0.931 0.241 -0.868 1.295 sum -0.893 6.336 11.631 13.275 Atomic orbital electron populations 1.22107 0.94974 1.01482 1.02056 1.22253 0.94546 0.97515 0.92113 0.91519 1.18943 0.95770 0.93648 0.91492 1.22471 0.93698 1.34694 1.05081 0.86968 1.25871 1.02255 0.95916 0.96006 1.70136 1.37199 1.40699 1.10333 0.85906 0.81426 0.78969 0.77374 1.18798 1.22001 1.18853 1.69210 1.04076 1.45469 1.00679 1.23181 0.97532 0.95235 0.92927 0.89479 1.22743 1.02580 0.94879 1.03665 1.23399 0.95371 1.02805 0.94822 1.22377 0.91422 0.94038 0.94753 1.22309 0.96587 0.97987 1.04999 1.22822 1.02637 0.95871 1.03446 0.93991 0.89866 0.93053 1.00394 0.99453 0.93594 0.90800 0.90612 0.90548 0.89690 0.89038 0.90136 0.92672 0.93884 0.89229 0.91907 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 8.41 71.98 0.61 -4.61 16 2 C 0.04 1.80 1.48 44.91 0.07 1.87 16 3 H 0.07 2.63 3.59 -2.39 -0.01 2.62 16 4 C 0.04 2.07 4.64 29.85 0.14 2.21 16 5 C -0.52 -28.32 5.67 25.60 0.15 -28.17 16 6 H 0.11 5.51 2.24 -2.91 -0.01 5.50 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 9 Si 0.94 44.21 29.20 68.60 2.00 46.21 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.47 -17.97 5.92 -826.76 -4.89 -22.86 16 14 C 0.02 0.59 4.07 42.19 0.17 0.76 16 15 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 16 C -0.18 -4.29 6.86 71.98 0.49 -3.79 16 17 C -0.13 -3.44 7.15 30.94 0.22 -3.22 16 18 C 0.06 2.25 0.79 0.80 0.00 2.25 16 19 C -0.16 -6.31 8.80 71.98 0.63 -5.68 16 20 C -0.19 -6.24 6.80 71.98 0.49 -5.75 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 2.35 5.25 -2.39 -0.01 2.34 16 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 24 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 27 H 0.07 1.99 3.71 -2.39 -0.01 1.98 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.08 1.62 5.47 -2.39 -0.01 1.61 16 30 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 31 H 0.09 2.02 7.84 -2.39 -0.02 2.01 16 32 H 0.08 3.81 4.00 -2.38 -0.01 3.80 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 35 H 0.09 2.41 4.17 -2.38 -0.01 2.40 16 36 H 0.06 1.89 8.08 -2.38 -0.02 1.87 16 37 H 0.07 2.93 4.01 -2.39 -0.01 2.93 16 Total: -1.00 -64.15 259.61 1.88 -62.26 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.06 Total: 16.65 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 3.43 Total: -43.93 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -4.61 Total: -81.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.00 Total: 46.21 kcal Total: -64.15 1.88 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.178 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds