Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47605 * 2 1 4 4 C 1.53001 * 109.47485 * 120.00460 * 2 1 3 5 5 C 1.50702 * 109.47238 * 188.44562 * 4 2 1 6 6 H 1.07995 * 119.99963 * 5.57081 * 5 4 2 7 7 C 1.37875 * 119.99742 * 185.30336 * 5 4 2 8 8 N 1.31515 * 120.00290 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47296 * 119.99917 * 9 7 5 12 12 H 1.48507 * 109.46756 * 239.99741 * 9 7 5 13 13 N 1.46905 * 109.46999 * 240.00232 * 2 1 3 14 14 C 1.47482 * 111.00110 * 164.77777 * 13 2 1 15 15 H 1.09008 * 113.47564 * 336.06114 * 14 13 2 16 16 C 1.53000 * 113.47730 * 106.53060 * 14 13 2 17 17 C 1.53513 * 87.93254 * 221.29728 * 14 13 2 18 18 C 1.47473 * 110.99952 * 68.80502 * 13 2 1 19 19 C 1.53003 * 113.47646 * 253.47270 * 18 13 2 20 20 C 1.53000 * 113.47922 * 23.93949 * 18 13 2 21 21 H 1.08990 * 109.47301 * 57.49137 * 1 2 3 22 22 H 1.08996 * 109.47368 * 177.49703 * 1 2 3 23 23 H 1.09004 * 109.47096 * 297.49127 * 1 2 3 24 24 H 1.08999 * 109.47109 * 68.44218 * 4 2 1 25 25 H 1.09001 * 109.47132 * 308.44362 * 4 2 1 26 26 H 0.97000 * 120.00375 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47436 * 70.94034 * 16 14 13 28 28 H 1.09003 * 109.47255 * 190.94482 * 16 14 13 29 29 H 1.09007 * 109.46998 * 310.93936 * 16 14 13 30 30 H 1.09001 * 114.16759 * 272.37742 * 17 14 13 31 31 H 1.08993 * 114.34303 * 139.68250 * 17 14 13 32 32 H 1.08994 * 109.47011 * 59.99716 * 19 18 13 33 33 H 1.09006 * 109.46566 * 180.02562 * 19 18 13 34 34 H 1.08996 * 109.46949 * 299.99671 * 19 18 13 35 35 H 1.08998 * 109.47097 * 62.53016 * 20 18 13 36 36 H 1.08999 * 109.47881 * 182.53530 * 20 18 13 37 37 H 1.09010 * 109.46958 * 302.53549 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5325 -0.5432 1.3579 6 1 4.0515 0.1006 0.6633 7 6 4.2346 -1.1978 2.3476 8 7 3.6018 -1.9772 3.1971 9 14 6.0845 -0.9764 2.4829 10 1 6.5520 -0.0549 1.4164 11 1 6.4189 -0.4057 3.8125 12 1 6.7533 -2.2931 2.3271 13 7 2.0196 -0.6925 -1.1995 14 6 3.4483 -0.4071 -1.4283 15 1 3.7822 0.5274 -0.9773 16 6 4.3659 -1.5859 -1.0974 17 6 3.1269 -0.2836 -2.9243 18 6 1.7264 0.0872 -2.4165 19 6 0.5956 -0.5035 -3.2611 20 6 1.5500 1.5841 -2.1537 21 1 -0.3633 0.5522 -0.8666 22 1 -0.3634 -1.0266 -0.0449 23 1 -0.3633 0.4744 0.9117 24 1 1.8052 -1.7833 1.1769 25 1 1.5588 -0.3021 2.1328 26 1 4.0957 -2.4380 3.8932 27 1 4.2346 -2.3693 -1.8436 28 1 5.4032 -1.2510 -1.1008 29 1 4.1137 -1.9770 -0.1116 30 1 3.1689 -1.2268 -3.4691 31 1 3.6479 0.5292 -3.4302 32 1 -0.3187 -0.5408 -2.6690 33 1 0.4346 0.1207 -4.1401 34 1 0.8658 -1.5113 -3.5762 35 1 2.4800 1.9963 -1.7622 36 1 1.2925 2.0887 -3.0849 37 1 0.7518 1.7337 -1.4266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695903690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = 27.928617 kcal Electronic energy + Delta-G solvation = -15444.269134 eV Core-core repulsion = 13222.593195 eV Total energy + Delta-G solvation = -2221.675939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50263 -34.09699 -32.44493 -31.49118 -27.98416 -27.21763 -26.91683 -25.79939 -22.98748 -20.32126 -19.59312 -17.69500 -16.25742 -15.45971 -14.94334 -14.30758 -14.14089 -13.50099 -12.93739 -12.33024 -12.25054 -12.08510 -11.83730 -11.64701 -11.43715 -11.29035 -11.10752 -11.00867 -10.81792 -10.76129 -10.66616 -10.30676 -10.10126 -9.54824 -9.40966 -8.96816 -8.80042 -8.29878 -7.89795 -5.95189 -3.91115 3.31477 3.40214 3.42375 4.48372 4.59923 4.99667 5.22678 5.40938 5.45285 5.69239 5.76734 5.86353 5.91713 5.94372 6.05544 6.09937 6.15072 6.23315 6.26436 6.36113 6.44234 6.52955 6.57461 6.67914 6.74144 6.84860 6.94679 7.01973 7.36987 7.64726 7.71089 7.80564 8.04920 8.21267 8.47198 9.09274 9.65846 11.16216 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038051 B = 0.011268 C = 0.009716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.673778 B = 2484.354231 C = 2881.075407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 H 0.039 0.961 4 C 0.029 3.971 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.878 3.122 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.284 1.284 13 N -0.441 5.441 14 C 0.057 3.943 15 H 0.074 0.926 16 C -0.141 4.141 17 C -0.147 4.147 18 C 0.041 3.959 19 C -0.121 4.121 20 C -0.160 4.160 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.029 0.971 25 H 0.013 0.987 26 H 0.258 0.742 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 4.359 -10.633 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 H 0.057 0.943 4 C -0.008 4.008 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.706 3.294 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.165 5.165 14 C -0.052 4.052 15 H 0.092 0.908 16 C -0.198 4.198 17 C -0.185 4.185 18 C -0.050 4.050 19 C -0.179 4.179 20 C -0.218 4.218 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.197 3.558 -10.360 11.411 hybrid contribution 1.318 0.982 0.289 1.668 sum -1.880 4.540 -10.071 11.205 Atomic orbital electron populations 1.21951 0.96658 1.01484 1.00038 1.22295 0.93388 0.96617 0.93793 0.94296 1.19128 0.95523 0.96415 0.89713 1.21412 0.92918 1.26658 1.13432 0.92029 1.24939 0.97699 0.95688 0.95974 1.69973 1.35288 1.30419 1.17714 0.86751 0.86742 0.78013 0.77849 1.19663 1.21291 1.20980 1.69050 1.05575 1.41714 1.00146 1.23008 0.91163 0.98943 0.92049 0.90783 1.21966 0.96490 0.96481 1.04841 1.23565 0.96026 1.01161 0.97739 1.22547 0.95239 0.92585 0.94626 1.21608 0.97834 1.00361 0.98108 1.22180 1.02544 0.95378 1.01675 0.93740 0.92580 0.93126 0.95263 0.96872 0.93222 0.94645 0.94504 0.87451 0.89741 0.92054 0.92656 0.93347 0.92393 0.92454 0.92778 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.39 37.15 0.31 -2.28 16 2 C 0.05 0.99 1.54 -67.71 -0.10 0.89 16 3 H 0.04 0.82 5.75 -51.93 -0.30 0.52 16 4 C 0.03 0.75 4.64 -27.88 -0.13 0.63 16 5 C -0.51 -13.53 5.34 -34.44 -0.18 -13.71 16 6 H 0.06 1.60 4.73 -52.49 -0.25 1.35 16 7 C 0.06 1.61 5.14 -17.82 -0.09 1.51 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.44 -8.67 5.71 -212.68 -1.21 -9.88 16 14 C 0.06 1.11 2.07 -71.44 -0.15 0.96 16 15 H 0.07 1.53 5.41 -51.92 -0.28 1.25 16 16 C -0.14 -2.89 9.04 37.16 0.34 -2.56 16 17 C -0.15 -2.33 7.08 -26.20 -0.19 -2.52 16 18 C 0.04 0.65 0.81 -135.33 -0.11 0.54 16 19 C -0.12 -1.71 9.35 37.16 0.35 -1.36 16 20 C -0.16 -2.35 7.48 37.16 0.28 -2.07 16 21 H 0.04 0.70 4.93 -51.93 -0.26 0.44 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.01 0.36 8.13 -51.93 -0.42 -0.07 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 2.62 5.34 -51.93 -0.28 2.35 16 30 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 31 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.05 0.79 6.87 -51.93 -0.36 0.43 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.82 7.97 -51.93 -0.41 0.41 16 35 H 0.06 0.88 6.83 -51.93 -0.35 0.53 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.07 1.07 4.86 -51.92 -0.25 0.82 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -28.42 272.30 -7.13 -35.55 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.06 Total: -0.37 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 0.32 Total: -19.96 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.48 Total: -35.69 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.42 -7.13 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds