Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47605 * 2 1 4 4 C 1.53001 * 109.47485 * 120.00460 * 2 1 3 5 5 C 1.50702 * 109.47238 * 188.44562 * 4 2 1 6 6 H 1.07995 * 119.99963 * 5.57081 * 5 4 2 7 7 C 1.37875 * 119.99742 * 185.30336 * 5 4 2 8 8 N 1.31515 * 120.00290 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46760 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47296 * 119.99917 * 9 7 5 12 12 H 1.48507 * 109.46756 * 239.99741 * 9 7 5 13 13 N 1.46905 * 109.46999 * 240.00232 * 2 1 3 14 14 C 1.47482 * 111.00110 * 164.77777 * 13 2 1 15 15 H 1.09008 * 113.47564 * 336.06114 * 14 13 2 16 16 C 1.53000 * 113.47730 * 106.53060 * 14 13 2 17 17 C 1.53513 * 87.93254 * 221.29728 * 14 13 2 18 18 C 1.47473 * 110.99952 * 68.80502 * 13 2 1 19 19 C 1.53003 * 113.47646 * 253.47270 * 18 13 2 20 20 C 1.53000 * 113.47922 * 23.93949 * 18 13 2 21 21 H 1.08990 * 109.47301 * 57.49137 * 1 2 3 22 22 H 1.08996 * 109.47368 * 177.49703 * 1 2 3 23 23 H 1.09004 * 109.47096 * 297.49127 * 1 2 3 24 24 H 1.08999 * 109.47109 * 68.44218 * 4 2 1 25 25 H 1.09001 * 109.47132 * 308.44362 * 4 2 1 26 26 H 0.97000 * 120.00375 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47436 * 70.94034 * 16 14 13 28 28 H 1.09003 * 109.47255 * 190.94482 * 16 14 13 29 29 H 1.09007 * 109.46998 * 310.93936 * 16 14 13 30 30 H 1.09001 * 114.16759 * 272.37742 * 17 14 13 31 31 H 1.08993 * 114.34303 * 139.68250 * 17 14 13 32 32 H 1.08994 * 109.47011 * 59.99716 * 19 18 13 33 33 H 1.09006 * 109.46566 * 180.02562 * 19 18 13 34 34 H 1.08996 * 109.46949 * 299.99671 * 19 18 13 35 35 H 1.08998 * 109.47097 * 62.53016 * 20 18 13 36 36 H 1.08999 * 109.47881 * 182.53530 * 20 18 13 37 37 H 1.09010 * 109.46958 * 302.53549 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5325 -0.5432 1.3579 6 1 4.0515 0.1006 0.6633 7 6 4.2346 -1.1978 2.3476 8 7 3.6018 -1.9772 3.1971 9 14 6.0845 -0.9764 2.4829 10 1 6.5520 -0.0549 1.4164 11 1 6.4189 -0.4057 3.8125 12 1 6.7533 -2.2931 2.3271 13 7 2.0196 -0.6925 -1.1995 14 6 3.4483 -0.4071 -1.4283 15 1 3.7822 0.5274 -0.9773 16 6 4.3659 -1.5859 -1.0974 17 6 3.1269 -0.2836 -2.9243 18 6 1.7264 0.0872 -2.4165 19 6 0.5956 -0.5035 -3.2611 20 6 1.5500 1.5841 -2.1537 21 1 -0.3633 0.5522 -0.8666 22 1 -0.3634 -1.0266 -0.0449 23 1 -0.3633 0.4744 0.9117 24 1 1.8052 -1.7833 1.1769 25 1 1.5588 -0.3021 2.1328 26 1 4.0957 -2.4380 3.8932 27 1 4.2346 -2.3693 -1.8436 28 1 5.4032 -1.2510 -1.1008 29 1 4.1137 -1.9770 -0.1116 30 1 3.1689 -1.2268 -3.4691 31 1 3.6479 0.5292 -3.4302 32 1 -0.3187 -0.5408 -2.6690 33 1 0.4346 0.1207 -4.1401 34 1 0.8658 -1.5113 -3.5762 35 1 2.4800 1.9963 -1.7622 36 1 1.2925 2.0887 -3.0849 37 1 0.7518 1.7337 -1.4266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695903690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = 9.419539 kcal Electronic energy + Delta-G solvation = -15445.071748 eV Core-core repulsion = 13222.593195 eV Total energy + Delta-G solvation = -2222.478553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.93218 -35.94244 -34.21898 -33.04260 -29.67908 -28.73501 -28.28642 -27.19996 -24.99223 -21.80639 -21.24900 -19.11678 -18.30300 -16.95936 -16.65503 -16.05233 -15.47419 -15.00523 -14.43972 -14.02520 -13.92342 -13.64168 -13.33937 -13.15163 -12.94987 -12.77331 -12.65773 -12.57513 -12.50799 -12.31234 -12.19881 -12.06198 -11.73455 -11.21867 -10.87346 -10.83151 -10.60947 -10.46153 -9.41170 -8.11549 -6.12218 1.36541 1.38899 1.49059 2.43081 3.17755 3.27034 3.67134 3.95553 4.27038 4.29223 4.32706 4.41501 4.51657 4.65391 4.72182 4.83328 4.87409 4.90644 4.96825 5.02530 5.08082 5.12696 5.19976 5.21818 5.30057 5.31616 5.44187 5.52353 5.64566 5.71534 5.75174 5.91679 6.05413 6.34237 6.60201 6.95420 7.48343 9.01390 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038051 B = 0.011268 C = 0.009716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.673778 B = 2484.354231 C = 2881.075407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.039 0.961 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.937 5.937 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.464 5.464 14 C 0.046 3.954 15 H 0.059 0.941 16 C -0.136 4.136 17 C -0.129 4.129 18 C 0.042 3.958 19 C -0.118 4.118 20 C -0.158 4.158 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.051 0.949 24 H -0.009 1.009 25 H -0.015 1.015 26 H 0.257 0.743 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 5.695 -13.107 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.051 4.051 3 H 0.056 0.944 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.579 5.579 9 Si 0.765 3.235 10 H -0.181 1.181 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.187 5.187 14 C -0.063 4.063 15 H 0.077 0.923 16 C -0.194 4.194 17 C -0.166 4.166 18 C -0.048 4.048 19 C -0.176 4.176 20 C -0.216 4.216 21 H 0.092 0.908 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.957 4.909 -12.854 14.073 hybrid contribution 1.216 0.547 1.031 1.685 sum -1.741 5.456 -11.822 13.136 Atomic orbital electron populations 1.21875 0.94551 1.01419 1.01485 1.22053 0.95063 0.95637 0.92364 0.94353 1.18994 0.95347 0.94442 0.91417 1.21676 0.93477 1.25727 1.12759 0.91219 1.25721 1.02109 0.95609 0.95885 1.70113 1.37092 1.31982 1.18752 0.85777 0.81531 0.78115 0.78048 1.18089 1.21218 1.20858 1.69034 1.05889 1.42896 1.00917 1.23015 0.90816 0.97464 0.95053 0.92282 1.21851 0.97301 0.97497 1.02707 1.23478 0.95624 1.02409 0.95109 1.22700 0.96301 0.93185 0.92637 1.21602 0.96659 1.00655 0.98687 1.22163 1.01925 0.94417 1.03051 0.90806 0.93517 0.93022 0.99046 0.99631 0.93370 0.93238 0.93815 0.91789 0.88996 0.89681 0.92992 0.90474 0.92775 0.93462 0.89775 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.39 71.98 0.60 -4.18 16 2 C 0.06 2.40 1.54 44.91 0.07 2.47 16 3 H 0.04 1.60 5.75 -2.39 -0.01 1.58 16 4 C 0.04 1.88 4.64 29.85 0.14 2.02 16 5 C -0.50 -27.25 5.34 25.60 0.14 -27.11 16 6 H 0.07 3.65 4.73 -2.91 -0.01 3.63 16 7 C 0.00 0.18 5.14 84.65 0.44 0.62 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 9 Si 0.94 44.47 29.54 68.60 2.03 46.49 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.46 -17.74 5.71 -826.78 -4.72 -22.46 16 14 C 0.05 1.71 2.07 42.19 0.09 1.80 16 15 H 0.06 2.38 5.41 -2.38 -0.01 2.37 16 16 C -0.14 -5.52 9.04 71.98 0.65 -4.87 16 17 C -0.13 -3.65 7.08 30.94 0.22 -3.43 16 18 C 0.04 1.21 0.81 0.80 0.00 1.22 16 19 C -0.12 -2.89 9.35 71.98 0.67 -2.21 16 20 C -0.16 -4.08 7.48 71.98 0.54 -3.54 16 21 H 0.07 2.15 4.93 -2.39 -0.01 2.14 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.84 8.13 -2.39 -0.02 -0.86 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.05 1.80 7.77 -2.39 -0.02 1.79 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 3.18 5.34 -2.38 -0.01 3.17 16 30 H 0.09 2.50 7.74 -2.39 -0.02 2.48 16 31 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 32 H 0.05 1.30 6.87 -2.39 -0.02 1.29 16 33 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.36 7.97 -2.39 -0.02 1.34 16 35 H 0.05 1.32 6.83 -2.39 -0.02 1.30 16 36 H 0.08 1.68 8.13 -2.39 -0.02 1.67 16 37 H 0.07 1.78 4.86 -2.38 -0.01 1.77 16 Total: -1.00 -62.85 272.30 2.18 -60.67 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.95 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.55 Total: -37.23 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -4.43 Total: -79.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.85 2.18 -60.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.093 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds