Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46629 * 2 1 4 4 C 1.52993 * 109.47088 * 119.99918 * 2 1 3 5 5 C 1.50704 * 109.47179 * 185.00225 * 4 2 1 6 6 H 1.07996 * 119.99576 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00121 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99950 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47187 * 60.00171 * 9 7 5 11 11 H 1.48503 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46995 * 300.00173 * 9 7 5 13 13 N 1.46900 * 109.46974 * 240.00093 * 2 1 3 14 14 C 1.48182 * 111.07735 * 344.32685 * 13 2 1 15 15 H 1.09003 * 113.75654 * 23.12609 * 14 13 2 16 16 C 1.52993 * 113.82414 * 251.81105 * 14 13 2 17 17 C 1.53935 * 86.22374 * 137.46236 * 14 13 2 18 18 C 1.47963 * 111.00060 * 83.61893 * 13 2 1 19 19 C 1.53005 * 113.75826 * 108.09707 * 18 13 2 20 20 C 1.52996 * 113.75996 * 336.84274 * 18 13 2 21 21 H 1.08996 * 109.47412 * 185.87715 * 1 2 3 22 22 H 1.09004 * 109.47303 * 305.87599 * 1 2 3 23 23 H 1.09002 * 109.47313 * 65.87592 * 1 2 3 24 24 H 1.09004 * 109.47152 * 305.00173 * 4 2 1 25 25 H 1.09001 * 109.47535 * 65.00137 * 4 2 1 26 26 H 0.97005 * 120.00259 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47440 * 303.84505 * 16 14 13 28 28 H 1.09008 * 109.47396 * 63.85097 * 16 14 13 29 29 H 1.09006 * 109.47550 * 183.84891 * 16 14 13 30 30 H 1.09004 * 113.73435 * 222.01288 * 17 14 13 31 31 H 1.08998 * 113.82578 * 90.74540 * 17 14 13 32 32 H 1.08999 * 109.47171 * 298.01935 * 19 18 13 33 33 H 1.08994 * 109.46955 * 178.02063 * 19 18 13 34 34 H 1.09000 * 109.47020 * 58.02073 * 19 18 13 35 35 H 1.08996 * 109.47501 * 173.97079 * 20 18 13 36 36 H 1.09006 * 109.47292 * 293.97198 * 20 18 13 37 37 H 1.09007 * 109.47259 * 53.96744 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1925 2.3584 8 7 3.5764 -1.8368 3.3000 9 14 6.0921 -1.0612 2.4367 10 1 6.4854 0.3695 2.4952 11 1 6.5870 -1.7612 3.6493 12 1 6.6838 -1.6883 1.2275 13 7 2.0196 -0.6925 -1.1995 14 6 0.9421 -1.4890 -1.8321 15 1 -0.0619 -1.1426 -1.5869 16 6 1.1099 -3.0003 -1.6626 17 6 1.4728 -0.9527 -3.1738 18 6 2.0516 0.2209 -2.3631 19 6 3.4639 0.6272 -2.7891 20 6 1.1000 1.4123 -2.2379 21 1 -0.3634 -1.0222 0.1052 22 1 -0.3634 0.6023 0.8327 23 1 -0.3634 0.4200 -0.9379 24 1 1.6053 -0.2617 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 4.0607 -2.2436 4.0355 27 1 2.0814 -3.3040 -2.0523 28 1 1.0464 -3.2566 -0.6050 29 1 0.3213 -3.5171 -2.2096 30 1 0.6875 -0.6594 -3.8706 31 1 2.2323 -1.5863 -3.6319 32 1 3.9473 1.1681 -1.9756 33 1 3.4076 1.2683 -3.6688 34 1 4.0427 -0.2654 -3.0265 35 1 1.2562 2.0917 -3.0759 36 1 0.0696 1.0568 -2.2456 37 1 1.2962 1.9374 -1.3030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695903692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 35.552654 kcal Electronic energy + Delta-G solvation = -15222.843689 eV Core-core repulsion = 13001.498353 eV Total energy + Delta-G solvation = -2221.345336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57362 -34.01443 -32.03709 -31.75070 -28.13986 -27.83164 -26.53319 -25.96770 -23.05218 -20.61384 -19.61395 -17.31730 -16.24420 -15.99657 -14.97502 -14.28382 -14.26234 -13.40429 -12.86283 -12.69941 -12.48613 -12.23262 -11.91069 -11.71882 -11.60143 -11.40430 -11.30597 -10.99692 -10.86261 -10.64986 -10.47407 -10.29176 -10.05263 -9.74702 -9.44996 -9.12699 -8.90586 -8.18524 -7.76541 -5.82312 -3.79532 3.43716 3.47198 3.50920 4.40867 4.61051 4.87044 5.11561 5.39511 5.49818 5.54629 5.57607 5.69705 5.79756 5.82606 5.95851 5.97850 6.05263 6.08475 6.10767 6.20211 6.32797 6.37482 6.43687 6.45259 6.54602 6.64252 6.75901 6.86141 7.11887 7.33031 7.69995 7.90052 8.11691 8.18487 8.66336 9.24979 9.81153 11.29881 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.010278 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.580868 B = 2723.488981 C = 2928.450625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.066 0.934 4 C 0.039 3.961 5 C -0.486 4.486 6 H 0.055 0.945 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.431 5.431 14 C 0.009 3.991 15 H 0.089 0.911 16 C -0.127 4.127 17 C -0.135 4.135 18 C 0.044 3.956 19 C -0.119 4.119 20 C -0.160 4.160 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.013 0.987 25 H 0.017 0.983 26 H 0.257 0.743 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 3.237 -11.867 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.058 4.058 3 H 0.084 0.916 4 C 0.002 3.998 5 C -0.525 4.525 6 H 0.074 0.926 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.154 5.154 14 C -0.100 4.100 15 H 0.107 0.893 16 C -0.185 4.185 17 C -0.173 4.173 18 C -0.046 4.046 19 C -0.177 4.177 20 C -0.217 4.217 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.220 2.823 -11.449 12.895 hybrid contribution 0.317 0.447 0.106 0.558 sum -4.902 3.270 -11.342 12.782 Atomic orbital electron populations 1.22825 0.99091 1.01568 1.00932 1.22310 0.90809 0.98512 0.94167 0.91578 1.19038 0.96014 0.95311 0.89440 1.21100 0.91970 1.32792 1.06648 0.92641 1.24984 0.97844 0.95963 0.96070 1.69956 1.35180 1.37043 1.12380 0.86724 0.86619 0.77906 0.77084 1.20593 1.21652 1.20391 1.68999 1.33903 1.12572 0.99946 1.23762 0.96512 0.95937 0.93780 0.89343 1.21518 1.00923 0.93829 1.02197 1.23617 0.99955 0.97465 0.96273 1.22644 0.95564 0.92356 0.94083 1.21497 0.95048 1.01123 1.00035 1.22316 0.98942 0.98062 1.02425 0.92509 0.92931 0.92529 0.96879 0.96497 0.93361 0.92366 0.92020 0.93461 0.92289 0.89786 0.92241 0.93306 0.92195 0.92702 0.92030 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 7.23 37.16 0.27 -2.95 16 2 C 0.05 1.05 1.98 -67.72 -0.13 0.92 16 3 H 0.07 1.41 6.12 -51.92 -0.32 1.09 16 4 C 0.04 1.04 4.65 -27.88 -0.13 0.91 16 5 C -0.49 -14.08 8.84 -34.44 -0.30 -14.38 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -28.00 13.29 55.43 0.74 -27.27 16 9 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.43 -8.42 5.49 -206.44 -1.13 -9.56 16 14 C 0.01 0.15 2.99 -66.54 -0.20 -0.05 16 15 H 0.09 1.38 4.45 -51.93 -0.23 1.15 16 16 C -0.13 -2.08 9.99 37.15 0.37 -1.70 16 17 C -0.14 -1.95 6.93 -25.79 -0.18 -2.13 16 18 C 0.04 0.71 1.39 -130.54 -0.18 0.52 16 19 C -0.12 -1.85 9.47 37.16 0.35 -1.50 16 20 C -0.16 -2.22 7.55 37.16 0.28 -1.94 16 21 H 0.06 0.99 6.97 -51.93 -0.36 0.63 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.84 3.78 -51.93 -0.20 0.64 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 28 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 35 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.06 0.80 5.46 -51.93 -0.28 0.52 16 37 H 0.07 1.06 5.90 -51.92 -0.31 0.76 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -30.80 281.87 -7.40 -38.20 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.28 Total: -2.30 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 0.05 Total: -20.92 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.40 Total: -36.82 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.80 -7.40 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.753 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds