Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46629 * 2 1 4 4 C 1.52993 * 109.47088 * 119.99918 * 2 1 3 5 5 C 1.50704 * 109.47179 * 185.00225 * 4 2 1 6 6 H 1.07996 * 119.99576 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00121 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99950 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47187 * 60.00171 * 9 7 5 11 11 H 1.48503 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46995 * 300.00173 * 9 7 5 13 13 N 1.46900 * 109.46974 * 240.00093 * 2 1 3 14 14 C 1.48182 * 111.07735 * 344.32685 * 13 2 1 15 15 H 1.09003 * 113.75654 * 23.12609 * 14 13 2 16 16 C 1.52993 * 113.82414 * 251.81105 * 14 13 2 17 17 C 1.53935 * 86.22374 * 137.46236 * 14 13 2 18 18 C 1.47963 * 111.00060 * 83.61893 * 13 2 1 19 19 C 1.53005 * 113.75826 * 108.09707 * 18 13 2 20 20 C 1.52996 * 113.75996 * 336.84274 * 18 13 2 21 21 H 1.08996 * 109.47412 * 185.87715 * 1 2 3 22 22 H 1.09004 * 109.47303 * 305.87599 * 1 2 3 23 23 H 1.09002 * 109.47313 * 65.87592 * 1 2 3 24 24 H 1.09004 * 109.47152 * 305.00173 * 4 2 1 25 25 H 1.09001 * 109.47535 * 65.00137 * 4 2 1 26 26 H 0.97005 * 120.00259 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47440 * 303.84505 * 16 14 13 28 28 H 1.09008 * 109.47396 * 63.85097 * 16 14 13 29 29 H 1.09006 * 109.47550 * 183.84891 * 16 14 13 30 30 H 1.09004 * 113.73435 * 222.01288 * 17 14 13 31 31 H 1.08998 * 113.82578 * 90.74540 * 17 14 13 32 32 H 1.08999 * 109.47171 * 298.01935 * 19 18 13 33 33 H 1.08994 * 109.46955 * 178.02063 * 19 18 13 34 34 H 1.09000 * 109.47020 * 58.02073 * 19 18 13 35 35 H 1.08996 * 109.47501 * 173.97079 * 20 18 13 36 36 H 1.09006 * 109.47292 * 293.97198 * 20 18 13 37 37 H 1.09007 * 109.47259 * 53.96744 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1925 2.3584 8 7 3.5764 -1.8368 3.3000 9 14 6.0921 -1.0612 2.4367 10 1 6.4854 0.3695 2.4952 11 1 6.5870 -1.7612 3.6493 12 1 6.6838 -1.6883 1.2275 13 7 2.0196 -0.6925 -1.1995 14 6 0.9421 -1.4890 -1.8321 15 1 -0.0619 -1.1426 -1.5869 16 6 1.1099 -3.0003 -1.6626 17 6 1.4728 -0.9527 -3.1738 18 6 2.0516 0.2209 -2.3631 19 6 3.4639 0.6272 -2.7891 20 6 1.1000 1.4123 -2.2379 21 1 -0.3634 -1.0222 0.1052 22 1 -0.3634 0.6023 0.8327 23 1 -0.3634 0.4200 -0.9379 24 1 1.6053 -0.2617 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 4.0607 -2.2436 4.0355 27 1 2.0814 -3.3040 -2.0523 28 1 1.0464 -3.2566 -0.6050 29 1 0.3213 -3.5171 -2.2096 30 1 0.6875 -0.6594 -3.8706 31 1 2.2323 -1.5863 -3.6319 32 1 3.9473 1.1681 -1.9756 33 1 3.4076 1.2683 -3.6688 34 1 4.0427 -0.2654 -3.0265 35 1 1.2562 2.0917 -3.0759 36 1 0.0696 1.0568 -2.2456 37 1 1.2962 1.9374 -1.3030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695903692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = 15.344958 kcal Electronic energy + Delta-G solvation = -15223.719961 eV Core-core repulsion = 13001.498353 eV Total energy + Delta-G solvation = -2222.221607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.90979 -35.87498 -33.97811 -33.05428 -29.76097 -29.37463 -27.94889 -27.22282 -25.09456 -22.05752 -21.11936 -18.62444 -18.43832 -17.40394 -16.71434 -16.11328 -15.54721 -14.64458 -14.44365 -14.27425 -13.90886 -13.72491 -13.60066 -13.31303 -13.14343 -12.82649 -12.70669 -12.61217 -12.51369 -12.33023 -12.04271 -11.79278 -11.60612 -11.23864 -11.07653 -10.92989 -10.76135 -10.46185 -9.19128 -8.11150 -6.16220 1.37559 1.41311 1.48566 2.45104 3.08669 3.24260 3.65948 3.89406 4.13796 4.23432 4.30139 4.41170 4.44665 4.49642 4.69370 4.75271 4.77336 4.86958 4.94125 4.98715 5.02433 5.07682 5.11865 5.16629 5.23879 5.31071 5.37907 5.38622 5.54899 5.60340 5.75728 5.85701 6.08679 6.36604 6.64273 6.97204 7.49069 9.01048 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.010278 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.580868 B = 2723.488981 C = 2928.450625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 H 0.059 0.941 4 C 0.046 3.954 5 C -0.498 4.498 6 H 0.052 0.948 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.474 5.474 14 C 0.004 3.996 15 H 0.102 0.898 16 C -0.124 4.124 17 C -0.116 4.116 18 C 0.039 3.961 19 C -0.119 4.119 20 C -0.155 4.155 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.090 0.910 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.258 0.742 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 4.134 -14.176 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.047 4.047 3 H 0.077 0.923 4 C 0.008 3.992 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.197 5.197 14 C -0.105 4.105 15 H 0.120 0.880 16 C -0.182 4.182 17 C -0.154 4.154 18 C -0.051 4.051 19 C -0.176 4.176 20 C -0.213 4.213 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.499 3.730 -13.772 15.292 hybrid contribution 0.404 0.147 0.818 0.924 sum -5.096 3.877 -12.955 14.451 Atomic orbital electron populations 1.22721 0.96331 1.01567 1.02795 1.21972 0.92991 0.97094 0.92666 0.92337 1.18899 0.95020 0.93730 0.91522 1.21422 0.93400 1.32391 1.06428 0.92928 1.25877 1.03010 0.95633 0.95736 1.70097 1.37164 1.38013 1.13052 0.85632 0.80473 0.78442 0.77244 1.19358 1.21071 1.19809 1.68896 1.35729 1.14493 1.00592 1.23905 0.96437 0.95295 0.94853 0.88045 1.21512 1.01614 0.94746 1.00327 1.23490 1.00432 0.96001 0.95484 1.22844 0.96407 0.93341 0.92483 1.21519 0.94692 1.00956 1.00467 1.22269 0.98899 0.97415 1.02691 0.93046 0.92925 0.89132 0.99793 0.99764 0.93295 0.93416 0.95414 0.90128 0.88957 0.89882 0.94620 0.90074 0.93245 0.90124 0.90749 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 7.23 71.98 0.52 -5.41 16 2 C 0.06 2.59 1.98 44.91 0.09 2.68 16 3 H 0.06 2.52 6.12 -2.38 -0.01 2.51 16 4 C 0.05 2.52 4.65 29.85 0.14 2.66 16 5 C -0.50 -29.70 8.84 25.60 0.23 -29.47 16 6 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 7 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 8 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 9 Si 0.96 47.10 29.54 68.60 2.03 49.12 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.47 -18.27 5.49 -807.05 -4.43 -22.70 16 14 C 0.00 0.12 2.99 44.97 0.13 0.25 16 15 H 0.10 2.88 4.45 -2.39 -0.01 2.87 16 16 C -0.12 -3.99 9.99 71.98 0.72 -3.27 16 17 C -0.12 -2.96 6.93 31.24 0.22 -2.74 16 18 C 0.04 1.16 1.39 3.63 0.01 1.17 16 19 C -0.12 -3.47 9.47 71.98 0.68 -2.79 16 20 C -0.16 -3.79 7.55 71.98 0.54 -3.24 16 21 H 0.05 1.77 6.97 -2.39 -0.02 1.75 16 22 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.09 2.41 3.78 -2.39 -0.01 2.40 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 27 H 0.05 1.59 8.02 -2.39 -0.02 1.57 16 28 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.08 2.14 7.86 -2.39 -0.02 2.12 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 34 H 0.05 1.51 7.98 -2.39 -0.02 1.49 16 35 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 36 H 0.07 1.61 5.46 -2.38 -0.01 1.59 16 37 H 0.05 1.52 5.90 -2.38 -0.01 1.50 16 Total: -1.00 -68.67 281.87 2.63 -66.04 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.02 Total: 7.40 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 3.74 Total: -40.12 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -4.15 Total: -82.44 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.67 2.63 -66.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.380 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds