Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47069 * 2 1 4 4 C 1.52999 * 109.47103 * 239.99841 * 2 1 3 5 5 C 1.50691 * 109.47125 * 178.39733 * 4 2 1 6 6 H 1.08004 * 120.00423 * 355.72305 * 5 4 2 7 7 C 1.37876 * 120.00076 * 175.99888 * 5 4 2 8 8 N 1.31513 * 120.00133 * 359.72368 * 7 5 4 9 9 Si 1.86804 * 120.00209 * 179.72341 * 7 5 4 10 10 H 1.48497 * 109.47074 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47045 * 120.00050 * 9 7 5 12 12 H 1.48498 * 109.47182 * 239.99967 * 9 7 5 13 13 N 1.46897 * 109.46967 * 120.00156 * 2 1 3 14 14 C 1.47476 * 110.99892 * 201.82611 * 13 2 1 15 15 H 1.09005 * 113.47633 * 253.47036 * 14 13 2 16 16 C 1.53003 * 113.47805 * 23.87331 * 14 13 2 17 17 C 1.53516 * 87.93628 * 138.70043 * 14 13 2 18 18 C 1.47483 * 110.99786 * 297.79226 * 13 2 1 19 19 C 1.53003 * 113.47760 * 336.06479 * 18 13 2 20 20 C 1.52996 * 113.47746 * 106.53347 * 18 13 2 21 21 H 1.08998 * 109.46831 * 57.35968 * 1 2 3 22 22 H 1.09004 * 109.47116 * 177.36260 * 1 2 3 23 23 H 1.08997 * 109.46900 * 297.35896 * 1 2 3 24 24 H 1.08999 * 109.46783 * 58.39590 * 4 2 1 25 25 H 1.09002 * 109.47133 * 298.39691 * 4 2 1 26 26 H 0.97000 * 120.00217 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47168 * 83.29984 * 16 14 13 28 28 H 1.09005 * 109.47054 * 203.30060 * 16 14 13 29 29 H 1.09007 * 109.46870 * 323.29237 * 16 14 13 30 30 H 1.09002 * 114.16931 * 87.62301 * 17 14 13 31 31 H 1.08994 * 114.17049 * 220.32659 * 17 14 13 32 32 H 1.08997 * 109.46838 * 90.03798 * 19 18 13 33 33 H 1.09000 * 109.46923 * 210.03723 * 19 18 13 34 34 H 1.08998 * 109.46798 * 330.03526 * 19 18 13 35 35 H 1.09004 * 109.47234 * 59.99979 * 20 18 13 36 36 H 1.09000 * 109.47788 * 180.02562 * 20 18 13 37 37 H 1.09002 * 109.47316 * 300.00007 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5464 -0.6870 -1.2692 6 1 4.0844 -0.1407 -0.5085 7 6 4.2379 -1.3482 -2.2620 8 7 3.5830 -2.0134 -3.1884 9 14 6.1051 -1.2992 -2.2913 10 1 6.5971 -0.4903 -1.1473 11 1 6.6382 -2.6812 -2.1853 12 1 6.5643 -0.6879 -3.5643 13 7 2.0197 -0.6925 1.1994 14 6 3.4009 -0.2853 1.5179 15 1 4.1428 -1.0504 1.2891 16 6 3.7758 1.0884 0.9582 17 6 2.9913 -0.2535 2.9971 18 6 1.5905 0.0062 2.4253 19 6 1.2868 1.4898 2.2067 20 6 0.4783 -0.7209 3.1836 21 1 -0.3633 0.5543 -0.8654 22 1 -0.3633 -1.0266 -0.0473 23 1 -0.3633 0.4723 0.9127 24 1 1.6534 -0.2243 -2.1389 25 1 1.7004 -1.7569 -1.2349 26 1 4.0695 -2.4782 -3.8871 27 1 3.4270 1.8654 1.6384 28 1 4.8589 1.1553 0.8549 29 1 3.3088 1.2230 -0.0175 30 1 3.0940 -1.2102 3.5093 31 1 3.4070 0.5840 3.5573 32 1 0.2358 1.6107 1.9447 33 1 1.4992 2.0427 3.1217 34 1 1.9093 1.8727 1.3980 35 1 0.8261 -1.7114 3.4771 36 1 0.2122 -0.1505 4.0735 37 1 -0.3962 -0.8187 2.5404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695903694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = 61.263584 kcal Electronic energy + Delta-G solvation = -15545.688190 eV Core-core repulsion = 13325.457764 eV Total energy + Delta-G solvation = -2220.230426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04876 -34.12120 -32.11159 -31.49064 -28.81064 -27.48020 -26.38401 -25.94126 -23.01355 -20.56542 -19.51558 -17.15343 -16.42767 -15.96648 -14.95181 -14.84726 -14.14474 -13.65398 -12.61299 -12.34777 -12.26038 -12.05070 -11.93488 -11.80754 -11.42097 -11.33279 -11.15091 -11.00319 -10.92294 -10.65531 -10.50551 -10.30738 -10.13640 -9.58499 -9.23948 -8.97929 -8.62846 -8.25975 -7.78502 -5.90058 -3.89004 3.34126 3.42285 3.43841 4.52515 4.61613 4.92505 5.24948 5.44223 5.47466 5.66287 5.66945 5.81446 5.85682 5.90389 5.94465 6.02651 6.12753 6.16785 6.21500 6.26835 6.35840 6.45827 6.47987 6.54940 6.71777 6.83140 6.90513 6.99869 7.09493 7.43622 7.69185 7.83194 8.11751 8.20334 8.53874 9.17069 9.73437 11.22208 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.011139 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.282316 B = 2513.112882 C = 2873.129773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.034 3.966 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.526 4.526 6 H 0.083 0.917 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.436 5.436 14 C 0.050 3.950 15 H 0.092 0.908 16 C -0.185 4.185 17 C -0.145 4.145 18 C 0.043 3.957 19 C -0.176 4.176 20 C -0.123 4.123 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.012 0.988 25 H 0.024 0.976 26 H 0.256 0.744 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 5.894 10.909 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.101 0.899 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.158 5.158 14 C -0.059 4.059 15 H 0.111 0.889 16 C -0.242 4.242 17 C -0.183 4.183 18 C -0.048 4.048 19 C -0.233 4.233 20 C -0.181 4.181 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.464 5.072 10.596 12.248 hybrid contribution 1.222 0.678 -0.216 1.414 sum -2.243 5.750 10.380 12.077 Atomic orbital electron populations 1.22073 0.96760 1.01537 1.00299 1.22525 0.93251 0.97850 0.93820 0.92533 1.19083 0.95838 0.95998 0.89558 1.22006 0.92094 1.31314 1.11022 0.89910 1.25017 0.97712 0.95736 0.95961 1.69993 1.34957 1.33960 1.14823 0.86696 0.86865 0.77680 0.77737 1.19746 1.21233 1.21330 1.69224 1.03491 1.43353 0.99762 1.22847 0.94194 0.96640 0.92218 0.88948 1.22780 1.01952 0.95958 1.03497 1.23513 0.96310 1.01379 0.97091 1.22582 0.94817 0.92950 0.94484 1.22647 1.02506 0.95701 1.02482 1.21633 0.97961 0.99848 0.98640 0.93272 0.92823 0.93203 0.96991 0.95729 0.93404 0.93053 0.92786 0.87645 0.89823 0.91791 0.92094 0.92971 0.89698 0.92406 0.93372 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.50 37.16 0.32 -2.38 16 2 C 0.03 0.70 1.53 -67.71 -0.10 0.59 16 3 H 0.06 1.14 3.43 -51.93 -0.18 0.96 16 4 C 0.03 0.84 4.67 -27.89 -0.13 0.71 16 5 C -0.53 -14.31 7.40 -34.44 -0.25 -14.56 16 6 H 0.08 2.08 2.84 -52.48 -0.15 1.93 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.44 -8.60 5.90 -212.69 -1.25 -9.85 16 14 C 0.05 0.95 3.23 -71.44 -0.23 0.72 16 15 H 0.09 1.97 7.63 -51.93 -0.40 1.57 16 16 C -0.18 -3.31 6.33 37.16 0.24 -3.07 16 17 C -0.15 -2.25 7.16 -26.20 -0.19 -2.44 16 18 C 0.04 0.67 0.80 -135.33 -0.11 0.56 16 19 C -0.18 -2.51 6.87 37.16 0.26 -2.25 16 20 C -0.12 -1.75 9.24 37.16 0.34 -1.40 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.78 3.98 -51.93 -0.21 0.58 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.05 0.78 5.41 -51.93 -0.28 0.50 16 28 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.11 2.14 3.82 -51.93 -0.20 1.94 16 30 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 31 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16 32 H 0.06 0.83 5.99 -51.93 -0.31 0.52 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.30 3.23 -51.93 -0.17 1.13 16 35 H 0.06 0.83 7.97 -51.93 -0.41 0.41 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.81 6.81 -51.93 -0.35 0.45 16 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -29.55 263.58 -7.11 -36.65 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.58 Total: 1.09 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 0.04 Total: -22.01 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.52 Total: -36.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.55 -7.11 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.918 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds