Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47069 * 2 1 4 4 C 1.52999 * 109.47103 * 239.99841 * 2 1 3 5 5 C 1.50691 * 109.47125 * 178.39733 * 4 2 1 6 6 H 1.08004 * 120.00423 * 355.72305 * 5 4 2 7 7 C 1.37876 * 120.00076 * 175.99888 * 5 4 2 8 8 N 1.31513 * 120.00133 * 359.72368 * 7 5 4 9 9 Si 1.86804 * 120.00209 * 179.72341 * 7 5 4 10 10 H 1.48497 * 109.47074 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47045 * 120.00050 * 9 7 5 12 12 H 1.48498 * 109.47182 * 239.99967 * 9 7 5 13 13 N 1.46897 * 109.46967 * 120.00156 * 2 1 3 14 14 C 1.47476 * 110.99892 * 201.82611 * 13 2 1 15 15 H 1.09005 * 113.47633 * 253.47036 * 14 13 2 16 16 C 1.53003 * 113.47805 * 23.87331 * 14 13 2 17 17 C 1.53516 * 87.93628 * 138.70043 * 14 13 2 18 18 C 1.47483 * 110.99786 * 297.79226 * 13 2 1 19 19 C 1.53003 * 113.47760 * 336.06479 * 18 13 2 20 20 C 1.52996 * 113.47746 * 106.53347 * 18 13 2 21 21 H 1.08998 * 109.46831 * 57.35968 * 1 2 3 22 22 H 1.09004 * 109.47116 * 177.36260 * 1 2 3 23 23 H 1.08997 * 109.46900 * 297.35896 * 1 2 3 24 24 H 1.08999 * 109.46783 * 58.39590 * 4 2 1 25 25 H 1.09002 * 109.47133 * 298.39691 * 4 2 1 26 26 H 0.97000 * 120.00217 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47168 * 83.29984 * 16 14 13 28 28 H 1.09005 * 109.47054 * 203.30060 * 16 14 13 29 29 H 1.09007 * 109.46870 * 323.29237 * 16 14 13 30 30 H 1.09002 * 114.16931 * 87.62301 * 17 14 13 31 31 H 1.08994 * 114.17049 * 220.32659 * 17 14 13 32 32 H 1.08997 * 109.46838 * 90.03798 * 19 18 13 33 33 H 1.09000 * 109.46923 * 210.03723 * 19 18 13 34 34 H 1.08998 * 109.46798 * 330.03526 * 19 18 13 35 35 H 1.09004 * 109.47234 * 59.99979 * 20 18 13 36 36 H 1.09000 * 109.47788 * 180.02562 * 20 18 13 37 37 H 1.09002 * 109.47316 * 300.00007 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5464 -0.6870 -1.2692 6 1 4.0844 -0.1407 -0.5085 7 6 4.2379 -1.3482 -2.2620 8 7 3.5830 -2.0134 -3.1884 9 14 6.1051 -1.2992 -2.2913 10 1 6.5971 -0.4903 -1.1473 11 1 6.6382 -2.6812 -2.1853 12 1 6.5643 -0.6879 -3.5643 13 7 2.0197 -0.6925 1.1994 14 6 3.4009 -0.2853 1.5179 15 1 4.1428 -1.0504 1.2891 16 6 3.7758 1.0884 0.9582 17 6 2.9913 -0.2535 2.9971 18 6 1.5905 0.0062 2.4253 19 6 1.2868 1.4898 2.2067 20 6 0.4783 -0.7209 3.1836 21 1 -0.3633 0.5543 -0.8654 22 1 -0.3633 -1.0266 -0.0473 23 1 -0.3633 0.4723 0.9127 24 1 1.6534 -0.2243 -2.1389 25 1 1.7004 -1.7569 -1.2349 26 1 4.0695 -2.4782 -3.8871 27 1 3.4270 1.8654 1.6384 28 1 4.8589 1.1553 0.8549 29 1 3.3088 1.2230 -0.0175 30 1 3.0940 -1.2102 3.5093 31 1 3.4070 0.5840 3.5573 32 1 0.2358 1.6107 1.9447 33 1 1.4992 2.0427 3.1217 34 1 1.9093 1.8727 1.3980 35 1 0.8261 -1.7114 3.4771 36 1 0.2122 -0.1505 4.0735 37 1 -0.3962 -0.8187 2.5404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695903694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = 41.202822 kcal Electronic energy + Delta-G solvation = -15546.558090 eV Core-core repulsion = 13325.457764 eV Total energy + Delta-G solvation = -2221.100326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.45249 -35.95011 -33.97809 -32.92208 -30.17414 -29.24749 -27.78874 -27.25773 -25.03086 -21.99364 -21.08382 -18.62848 -18.44073 -17.41275 -16.65214 -16.18101 -15.88727 -15.20620 -14.19674 -13.93167 -13.65759 -13.53013 -13.38824 -13.19104 -13.12575 -12.91281 -12.71471 -12.65144 -12.42732 -12.31655 -12.07693 -11.80313 -11.72102 -11.12485 -10.78417 -10.63430 -10.55511 -10.42255 -9.28881 -8.10381 -6.15114 1.37402 1.38729 1.49786 2.44303 3.18700 3.33062 3.63137 4.01170 4.20303 4.26211 4.30449 4.43636 4.50301 4.55718 4.65233 4.74178 4.86032 4.94730 4.96775 5.03158 5.08062 5.13669 5.15341 5.20508 5.32851 5.37924 5.47276 5.49099 5.58257 5.66950 5.75372 5.90533 6.01667 6.38316 6.63328 7.01628 7.51713 9.03337 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.011139 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.282316 B = 2513.112882 C = 2873.129773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 H 0.069 0.931 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.105 0.895 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.949 3.051 10 H -0.254 1.254 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.468 5.468 14 C 0.036 3.964 15 H 0.057 0.943 16 C -0.179 4.179 17 C -0.127 4.127 18 C 0.045 3.955 19 C -0.174 4.174 20 C -0.122 4.122 21 H 0.052 0.948 22 H 0.037 0.963 23 H 0.080 0.920 24 H -0.016 1.016 25 H -0.020 1.020 26 H 0.255 0.745 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 7.735 13.514 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.086 0.914 4 C 0.000 4.000 5 C -0.565 4.565 6 H 0.122 0.878 7 C -0.204 4.204 8 N -0.586 5.586 9 Si 0.775 3.225 10 H -0.177 1.177 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.191 5.191 14 C -0.074 4.074 15 H 0.075 0.925 16 C -0.236 4.236 17 C -0.165 4.165 18 C -0.045 4.045 19 C -0.232 4.232 20 C -0.179 4.179 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.091 6.928 13.223 15.245 hybrid contribution 1.060 0.084 -1.000 1.460 sum -2.032 7.013 12.223 14.238 Atomic orbital electron populations 1.22025 0.94955 1.01011 1.02038 1.22292 0.94676 0.97506 0.92012 0.91356 1.18966 0.95722 0.93740 0.91604 1.22562 0.92957 1.30211 1.10791 0.87769 1.25959 1.02811 0.95774 0.95882 1.70158 1.36936 1.35562 1.15907 0.85621 0.80905 0.77652 0.78315 1.17730 1.21468 1.21004 1.69162 1.04397 1.44772 1.00780 1.22907 0.93123 0.96117 0.95252 0.92460 1.22665 1.01699 0.96403 1.02799 1.23437 0.95522 1.02705 0.94789 1.22714 0.95677 0.93970 0.92163 1.22619 1.02716 0.94370 1.03476 1.21638 0.96993 0.99859 0.99439 0.92925 0.94379 0.90154 0.99803 1.00145 0.93611 0.89652 0.92850 0.90343 0.89582 0.88952 0.91398 0.90098 0.90889 0.93107 0.90410 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.50 71.98 0.61 -4.46 16 2 C 0.04 1.79 1.53 44.92 0.07 1.86 16 3 H 0.07 2.69 3.43 -2.39 -0.01 2.68 16 4 C 0.04 2.01 4.67 29.85 0.14 2.15 16 5 C -0.53 -29.40 7.40 25.60 0.19 -29.21 16 6 H 0.10 5.27 2.84 -2.91 -0.01 5.26 16 7 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 8 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 9 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 10 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.47 -18.11 5.90 -826.82 -4.87 -22.99 16 14 C 0.04 1.30 3.23 42.18 0.14 1.43 16 15 H 0.06 2.45 7.63 -2.38 -0.02 2.43 16 16 C -0.18 -6.01 6.33 71.98 0.46 -5.56 16 17 C -0.13 -3.50 7.16 30.94 0.22 -3.28 16 18 C 0.05 1.28 0.80 0.79 0.00 1.28 16 19 C -0.17 -4.20 6.87 71.98 0.49 -3.71 16 20 C -0.12 -3.05 9.24 71.98 0.66 -2.38 16 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 2.34 3.98 -2.39 -0.01 2.33 16 24 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 25 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.09 2.28 5.41 -2.39 -0.01 2.27 16 28 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 29 H 0.08 3.09 3.82 -2.38 -0.01 3.08 16 30 H 0.09 2.34 8.00 -2.39 -0.02 2.32 16 31 H 0.09 2.06 7.99 -2.39 -0.02 2.04 16 32 H 0.07 1.55 5.99 -2.39 -0.01 1.53 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.95 3.23 -2.39 -0.01 1.95 16 35 H 0.05 1.33 7.97 -2.38 -0.02 1.31 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.30 6.81 -2.39 -0.02 1.29 16 Total: -1.00 -66.39 263.58 1.94 -64.46 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.05 Total: 12.54 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 3.45 Total: -41.92 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -4.59 Total: -82.42 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.39 1.94 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.660 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds