Wall clock time and date at job start Mon Mar 30 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47746 * 2 1 4 4 C 1.52999 * 109.47209 * 239.99749 * 2 1 3 5 5 C 1.50700 * 109.47306 * 175.00627 * 4 2 1 6 6 H 1.07997 * 119.99704 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00174 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00291 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46933 * 59.99522 * 9 7 5 11 11 H 1.48496 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46859 * 299.99764 * 9 7 5 13 13 N 1.46902 * 109.46932 * 120.00045 * 2 1 3 14 14 C 1.46900 * 111.00107 * 289.04996 * 13 2 1 15 15 C 1.53006 * 115.56020 * 319.70629 * 14 13 2 16 16 C 1.53076 * 117.49684 * 105.41491 * 14 13 2 17 17 C 1.52995 * 117.50336 * 174.01994 * 14 13 2 18 18 C 1.52997 * 117.50401 * 145.01511 * 17 14 13 19 19 C 1.53002 * 117.49584 * 0.02562 * 17 14 13 20 20 H 1.09001 * 109.46963 * 300.00541 * 1 2 3 21 21 H 1.09006 * 109.46961 * 59.99661 * 1 2 3 22 22 H 1.08999 * 109.47746 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46737 * 295.00500 * 4 2 1 24 24 H 1.08995 * 109.47236 * 55.00419 * 4 2 1 25 25 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 26 26 H 1.00899 * 111.00374 * 165.09212 * 13 2 1 27 27 H 1.09000 * 109.47091 * 282.90933 * 15 14 13 28 28 H 1.09003 * 109.46751 * 42.90412 * 15 14 13 29 29 H 1.08993 * 109.47168 * 162.90519 * 15 14 13 30 30 H 1.08993 * 117.49206 * 0.02562 * 16 14 13 31 31 H 1.09001 * 117.53095 * 214.95571 * 16 14 13 32 32 H 1.09000 * 109.46958 * 299.91797 * 18 17 14 33 33 H 1.08998 * 109.47286 * 179.91302 * 18 17 14 34 34 H 1.09007 * 109.46737 * 59.91565 * 18 17 14 35 35 H 1.09006 * 109.47363 * 180.08910 * 19 17 14 36 36 H 1.08999 * 109.46966 * 300.08745 * 19 17 14 37 37 H 1.08996 * 109.47287 * 60.08637 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2303 -1.1929 -2.3582 8 7 3.5763 -1.8372 -3.3000 9 14 6.0920 -1.0607 -2.4372 10 1 6.6844 -1.6867 -1.2279 11 1 6.5869 -1.7608 -3.6496 12 1 6.4845 0.3704 -2.4965 13 7 2.0196 -0.6925 1.1995 14 6 1.7730 0.1073 2.4067 15 6 2.0141 1.6114 2.2627 16 6 0.6400 -0.3418 3.3328 17 6 2.0973 -0.5338 3.7574 18 6 2.6377 0.3779 4.8608 19 6 2.6541 -1.9589 3.7474 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.7515 -1.7716 -1.2055 24 1 1.6055 -0.2618 -2.1369 25 1 4.0607 -2.2439 -4.0353 26 1 2.9983 -0.9212 1.1108 27 1 3.0852 1.8117 2.2874 28 1 1.6018 1.9562 1.3144 29 1 1.5269 2.1376 3.0835 30 1 0.0783 -1.2307 3.0462 31 1 0.0662 0.4341 3.8398 32 1 3.5698 0.8359 4.5296 33 1 2.8212 -0.2096 5.7603 34 1 1.9072 1.1572 5.0785 35 1 2.8357 -2.2853 4.7715 36 1 1.9338 -2.6271 3.2755 37 1 3.5894 -1.9796 3.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701962508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:53 Heat of formation + Delta-G solvation = 2.678994 kcal Electronic energy + Delta-G solvation = -14712.940796 eV Core-core repulsion = 12490.169951 eV Total energy + Delta-G solvation = -2222.770845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03200 -35.38840 -32.49531 -30.15786 -28.56654 -27.57552 -27.24694 -26.40603 -23.03448 -20.60039 -19.02995 -17.72751 -16.30250 -15.35119 -14.93104 -14.38759 -14.23991 -13.62984 -12.91097 -12.79821 -12.72789 -12.12400 -11.96860 -11.81009 -11.65864 -11.57672 -11.29748 -11.17025 -11.05673 -10.88321 -10.68367 -10.46946 -10.22907 -9.62655 -9.17649 -8.98401 -8.91131 -8.34563 -7.56380 -5.98911 -4.01412 3.32761 3.37710 3.39527 4.02581 4.45983 4.66770 5.01057 5.08990 5.33024 5.36120 5.45833 5.71782 5.80769 5.95505 5.97539 6.03319 6.07013 6.08961 6.14657 6.18087 6.27657 6.29248 6.38455 6.45274 6.52380 6.66793 6.70774 7.00238 7.05193 7.60221 7.70098 8.01583 8.13481 8.31742 8.43305 9.04252 9.62101 11.12108 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.008696 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.146528 B = 3219.146753 C = 3625.827192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 H 0.034 0.966 4 C 0.025 3.975 5 C -0.520 4.520 6 H 0.050 0.950 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.642 5.642 14 C 0.052 3.948 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.127 4.127 18 C -0.111 4.111 19 C -0.105 4.105 20 H 0.039 0.961 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.025 0.975 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.354 0.646 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 3.867 12.853 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.558 4.558 6 H 0.069 0.931 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.275 5.275 14 C -0.040 4.040 15 C -0.203 4.203 16 C -0.196 4.196 17 C -0.128 4.128 18 C -0.168 4.168 19 C -0.162 4.162 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.176 0.824 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.838 3.368 12.725 13.711 hybrid contribution 1.701 0.742 -0.292 1.879 sum -2.137 4.110 12.433 13.267 Atomic orbital electron populations 1.21791 0.96775 1.01253 0.99574 1.21684 0.93258 0.96104 0.91215 0.94865 1.19200 0.95325 0.96212 0.90519 1.21124 0.92284 1.34316 1.08088 0.93141 1.24983 0.98121 0.95290 0.95760 1.69955 1.35512 1.35706 1.11980 0.86713 0.86075 0.78101 0.77424 1.20234 1.21319 1.20416 1.60422 1.24891 1.42205 0.99960 1.21593 1.02658 0.91095 0.88682 1.21798 1.01462 0.94829 1.02202 1.23351 0.90579 1.02853 1.02808 1.21694 0.98419 0.97003 0.95644 1.21324 1.00561 0.98277 0.96675 1.21168 1.01282 0.93327 1.00411 0.94157 0.93512 0.92818 0.95656 0.96213 0.92963 0.82396 0.92632 0.91179 0.92838 0.88706 0.89905 0.92562 0.92604 0.92856 0.93352 0.91788 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.25 37.16 0.34 -2.16 16 2 C 0.09 1.81 2.19 -67.71 -0.15 1.66 16 3 H 0.03 0.71 5.68 -51.93 -0.29 0.42 16 4 C 0.02 0.64 4.64 -27.88 -0.13 0.51 16 5 C -0.52 -14.36 8.25 -34.44 -0.28 -14.65 16 6 H 0.05 1.35 7.26 -52.49 -0.38 0.97 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.64 -12.45 5.87 -93.01 -0.55 -13.00 16 14 C 0.05 0.84 1.89 -131.56 -0.25 0.59 16 15 C -0.14 -2.17 8.53 37.16 0.32 -1.85 16 16 C -0.16 -2.27 8.98 -26.69 -0.24 -2.51 16 17 C -0.13 -1.79 2.70 -154.51 -0.42 -2.20 16 18 C -0.11 -1.31 8.83 37.16 0.33 -0.98 16 19 C -0.10 -1.48 9.27 37.16 0.34 -1.13 16 20 H 0.04 0.67 7.18 -51.93 -0.37 0.30 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.35 7.48 7.30 -39.29 -0.29 7.19 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.13 5.75 -51.93 -0.30 0.83 16 29 H 0.05 0.69 7.42 -51.93 -0.39 0.31 16 30 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 31 H 0.08 1.06 8.02 -51.93 -0.42 0.64 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.59 7.93 -51.93 -0.41 0.18 16 34 H 0.05 0.58 7.49 -51.93 -0.39 0.19 16 35 H 0.05 0.58 7.93 -51.93 -0.41 0.17 16 36 H 0.06 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -28.63 293.22 -7.21 -35.84 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.57 Total: 3.34 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -0.23 Total: -21.12 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.19 Total: -39.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.63 -7.21 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701962508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.521 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds