Wall clock time and date at job start Mon Mar 30 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47746 * 2 1 4 4 C 1.52999 * 109.47209 * 239.99749 * 2 1 3 5 5 C 1.50700 * 109.47306 * 175.00627 * 4 2 1 6 6 H 1.07997 * 119.99704 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00174 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00291 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46933 * 59.99522 * 9 7 5 11 11 H 1.48496 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46859 * 299.99764 * 9 7 5 13 13 N 1.46902 * 109.46932 * 120.00045 * 2 1 3 14 14 C 1.46900 * 111.00107 * 289.04996 * 13 2 1 15 15 C 1.53006 * 115.56020 * 319.70629 * 14 13 2 16 16 C 1.53076 * 117.49684 * 105.41491 * 14 13 2 17 17 C 1.52995 * 117.50336 * 174.01994 * 14 13 2 18 18 C 1.52997 * 117.50401 * 145.01511 * 17 14 13 19 19 C 1.53002 * 117.49584 * 0.02562 * 17 14 13 20 20 H 1.09001 * 109.46963 * 300.00541 * 1 2 3 21 21 H 1.09006 * 109.46961 * 59.99661 * 1 2 3 22 22 H 1.08999 * 109.47746 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46737 * 295.00500 * 4 2 1 24 24 H 1.08995 * 109.47236 * 55.00419 * 4 2 1 25 25 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 26 26 H 1.00899 * 111.00374 * 165.09212 * 13 2 1 27 27 H 1.09000 * 109.47091 * 282.90933 * 15 14 13 28 28 H 1.09003 * 109.46751 * 42.90412 * 15 14 13 29 29 H 1.08993 * 109.47168 * 162.90519 * 15 14 13 30 30 H 1.08993 * 117.49206 * 0.02562 * 16 14 13 31 31 H 1.09001 * 117.53095 * 214.95571 * 16 14 13 32 32 H 1.09000 * 109.46958 * 299.91797 * 18 17 14 33 33 H 1.08998 * 109.47286 * 179.91302 * 18 17 14 34 34 H 1.09007 * 109.46737 * 59.91565 * 18 17 14 35 35 H 1.09006 * 109.47363 * 180.08910 * 19 17 14 36 36 H 1.08999 * 109.46966 * 300.08745 * 19 17 14 37 37 H 1.08996 * 109.47287 * 60.08637 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2303 -1.1929 -2.3582 8 7 3.5763 -1.8372 -3.3000 9 14 6.0920 -1.0607 -2.4372 10 1 6.6844 -1.6867 -1.2279 11 1 6.5869 -1.7608 -3.6496 12 1 6.4845 0.3704 -2.4965 13 7 2.0196 -0.6925 1.1995 14 6 1.7730 0.1073 2.4067 15 6 2.0141 1.6114 2.2627 16 6 0.6400 -0.3418 3.3328 17 6 2.0973 -0.5338 3.7574 18 6 2.6377 0.3779 4.8608 19 6 2.6541 -1.9589 3.7474 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.7515 -1.7716 -1.2055 24 1 1.6055 -0.2618 -2.1369 25 1 4.0607 -2.2439 -4.0353 26 1 2.9983 -0.9212 1.1108 27 1 3.0852 1.8117 2.2874 28 1 1.6018 1.9562 1.3144 29 1 1.5269 2.1376 3.0835 30 1 0.0783 -1.2307 3.0462 31 1 0.0662 0.4341 3.8398 32 1 3.5698 0.8359 4.5296 33 1 2.8212 -0.2096 5.7603 34 1 1.9072 1.1572 5.0785 35 1 2.8357 -2.2853 4.7715 36 1 1.9338 -2.6271 3.2755 37 1 3.5894 -1.9796 3.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701962508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:53 Heat of formation + Delta-G solvation = -14.213647 kcal Electronic energy + Delta-G solvation = -14713.673316 eV Core-core repulsion = 12490.169951 eV Total energy + Delta-G solvation = -2223.503365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.29106 -37.03389 -34.55134 -31.56556 -29.91023 -29.22373 -28.64264 -27.54337 -25.06576 -21.98805 -20.54798 -19.00941 -18.46708 -16.80432 -16.57075 -16.15904 -15.49967 -14.77699 -14.55524 -14.13155 -13.97960 -13.66523 -13.35505 -13.24472 -13.05687 -12.96108 -12.88946 -12.65224 -12.54366 -12.51288 -12.32164 -12.10104 -11.81337 -11.35040 -11.02265 -10.62563 -10.55597 -10.10581 -9.07318 -8.18009 -6.28087 1.39117 1.41518 1.49117 2.40750 2.85853 3.11839 3.33758 3.86685 3.97694 4.21742 4.29898 4.38063 4.48777 4.60287 4.72954 4.81758 4.87381 4.88888 4.97477 5.04538 5.05609 5.11297 5.18571 5.19263 5.28478 5.29236 5.34504 5.41920 5.51005 5.59914 5.64711 5.86809 6.22627 6.53347 6.70758 6.86781 7.40163 8.93677 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.008696 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.146528 B = 3219.146753 C = 3625.827192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.097 3.903 3 H 0.032 0.968 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.648 5.648 14 C 0.026 3.974 15 C -0.138 4.138 16 C -0.148 4.148 17 C -0.118 4.118 18 C -0.108 4.108 19 C -0.105 4.105 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.044 0.956 23 H -0.007 1.007 24 H -0.008 1.008 25 H 0.262 0.738 26 H 0.339 0.661 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 4.915 15.005 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.012 4.012 3 H 0.049 0.951 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.279 5.279 14 C -0.066 4.066 15 C -0.196 4.196 16 C -0.185 4.185 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.162 4.162 20 H 0.082 0.918 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.159 0.841 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.362 4.429 14.899 15.903 hybrid contribution 1.508 0.387 -0.937 1.817 sum -1.854 4.816 13.962 14.885 Atomic orbital electron populations 1.21685 0.94768 1.01100 1.00876 1.21436 0.94766 0.95133 0.89888 0.95055 1.19055 0.94875 0.94518 0.92115 1.21470 0.93265 1.33918 1.08089 0.92507 1.25906 1.03363 0.94906 0.95384 1.70098 1.37587 1.36841 1.12750 0.85578 0.79791 0.78473 0.77655 1.19164 1.21084 1.19429 1.60376 1.23721 1.43185 1.00645 1.21754 1.05226 0.91520 0.88085 1.21734 1.01362 0.94112 1.02440 1.23384 0.90614 1.02885 1.01647 1.21846 0.98249 0.97019 0.94799 1.21338 1.00693 0.98306 0.96172 1.21169 1.00124 0.93463 1.01477 0.91825 0.93158 0.93666 0.98905 0.98938 0.92906 0.84065 0.93125 0.92640 0.90208 0.89811 0.87567 0.92741 0.91021 0.91478 0.90986 0.93308 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.25 71.98 0.67 -3.95 16 2 C 0.10 4.11 2.19 44.91 0.10 4.20 16 3 H 0.03 1.35 5.68 -2.39 -0.01 1.33 16 4 C 0.03 1.70 4.64 29.85 0.14 1.84 16 5 C -0.53 -29.82 8.25 25.60 0.21 -29.61 16 6 H 0.06 3.06 7.26 -2.91 -0.02 3.04 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 9 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.65 -25.19 5.87 -448.17 -2.63 -27.82 16 14 C 0.03 0.80 1.89 3.55 0.01 0.81 16 15 C -0.14 -3.85 8.53 71.98 0.61 -3.24 16 16 C -0.15 -3.85 8.98 30.62 0.28 -3.57 16 17 C -0.12 -3.05 2.70 -52.18 -0.14 -3.19 16 18 C -0.11 -2.16 8.83 71.98 0.64 -1.52 16 19 C -0.11 -2.82 9.27 71.98 0.67 -2.15 16 20 H 0.06 2.01 7.18 -2.39 -0.02 1.99 16 21 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.34 14.57 7.30 -89.70 -0.66 13.92 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.70 5.75 -2.39 -0.01 1.69 16 29 H 0.08 1.78 7.42 -2.39 -0.02 1.76 16 30 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 31 H 0.11 2.29 8.02 -2.39 -0.02 2.27 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.22 7.93 -2.39 -0.02 1.20 16 34 H 0.07 1.17 7.49 -2.38 -0.02 1.15 16 35 H 0.07 1.56 7.93 -2.38 -0.02 1.54 16 36 H 0.05 1.43 7.90 -2.39 -0.02 1.41 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.17 293.22 3.68 -58.49 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.36 Total: 19.65 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.63 Total: -39.80 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.34 Total: -84.88 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.17 3.68 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701962508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.273 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds