Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46862 * 2 1 4 4 C 1.52993 * 109.47386 * 239.99446 * 2 1 3 5 5 C 1.50702 * 109.47215 * 174.99977 * 4 2 1 6 6 H 1.07999 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00183 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99801 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47191 * 60.00459 * 9 7 5 11 11 H 1.48508 * 109.46913 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47590 * 300.00155 * 9 7 5 13 13 N 1.46910 * 109.46865 * 119.99714 * 2 1 3 14 14 C 1.46898 * 110.99732 * 262.26532 * 13 2 1 15 15 C 1.53000 * 115.55113 * 63.86949 * 14 13 2 16 16 C 1.53004 * 117.49874 * 278.19349 * 14 13 2 17 17 C 1.53002 * 117.49468 * 209.53690 * 14 13 2 18 18 C 1.53009 * 117.49649 * 214.97865 * 17 14 13 19 19 C 1.52996 * 117.50068 * 359.97385 * 17 14 13 20 20 H 1.09005 * 109.47073 * 65.77447 * 1 2 3 21 21 H 1.09007 * 109.46947 * 185.76858 * 1 2 3 22 22 H 1.08993 * 109.47636 * 305.76649 * 1 2 3 23 23 H 1.08994 * 109.47834 * 295.00459 * 4 2 1 24 24 H 1.09002 * 109.47191 * 55.00368 * 4 2 1 25 25 H 0.97002 * 120.00119 * 180.02562 * 8 7 5 26 26 H 1.00899 * 111.00096 * 26.21858 * 13 2 1 27 27 H 1.08998 * 109.47298 * 54.45158 * 15 14 13 28 28 H 1.08998 * 109.47230 * 174.45260 * 15 14 13 29 29 H 1.08998 * 109.46967 * 294.45040 * 15 14 13 30 30 H 1.08996 * 117.50005 * 0.02562 * 16 14 13 31 31 H 1.08999 * 117.49820 * 145.02469 * 16 14 13 32 32 H 1.09000 * 109.46611 * 60.00414 * 18 17 14 33 33 H 1.09003 * 109.46939 * 179.97438 * 18 17 14 34 34 H 1.08993 * 109.46867 * 300.00250 * 18 17 14 35 35 H 1.09001 * 109.46720 * 60.00793 * 19 17 14 36 36 H 1.08999 * 109.47243 * 180.02562 * 19 17 14 37 37 H 1.08994 * 109.47742 * 300.00441 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1928 -2.3581 8 7 3.5765 -1.8363 -3.3003 9 14 6.0921 -1.0603 -2.4370 10 1 6.6846 -1.6863 -1.2278 11 1 6.5872 -1.7605 -3.6494 12 1 6.4845 0.3707 -2.4963 13 7 2.0196 -0.6925 1.1996 14 6 2.3691 0.2671 2.2555 15 6 1.2068 1.0973 2.8037 16 6 3.7408 0.9399 2.1729 17 6 3.4760 -0.1313 3.2338 18 6 3.3360 0.3317 4.6855 19 6 4.1336 -1.4987 3.0379 20 1 -0.3633 0.4217 -0.9372 21 1 -0.3633 -1.0225 0.1033 22 1 -0.3634 0.6006 0.8338 23 1 1.7517 -1.7715 -1.2055 24 1 1.6055 -0.2619 -2.1369 25 1 4.0608 -2.2431 -4.0357 26 1 1.3434 -1.3642 1.5307 27 1 0.4116 0.4319 3.1398 28 1 1.5547 1.7002 3.6425 29 1 0.8259 1.7515 2.0195 30 1 4.3837 0.6709 1.3349 31 1 3.8152 1.9740 2.5095 32 1 2.4173 -0.0740 5.1092 33 1 4.1896 -0.0222 5.2636 34 1 3.3012 1.4206 4.7177 35 1 4.5927 -1.5428 2.0502 36 1 4.8977 -1.6471 3.8009 37 1 3.3790 -2.2805 3.1230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701962509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = 3.979873 kcal Electronic energy + Delta-G solvation = -14840.161727 eV Core-core repulsion = 12617.447292 eV Total energy + Delta-G solvation = -2222.714434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93529 -35.34294 -32.42965 -30.20069 -28.47237 -27.66107 -26.94086 -26.32289 -22.95475 -20.59452 -19.10954 -17.95167 -16.17873 -15.20036 -14.57629 -14.20876 -14.07654 -13.43469 -13.16267 -12.82374 -12.71078 -12.12727 -12.00978 -11.84988 -11.74510 -11.49185 -11.40605 -11.24681 -10.93136 -10.72173 -10.51229 -10.48075 -9.94249 -9.47826 -9.26863 -8.88017 -8.78962 -8.19016 -7.50250 -5.81884 -3.78693 3.43234 3.47130 3.50082 4.07978 4.60706 4.69714 5.09105 5.17786 5.39093 5.44354 5.55166 5.72250 5.81984 5.86798 5.88899 5.96886 6.02473 6.08343 6.12517 6.17892 6.30501 6.33597 6.46827 6.49798 6.57586 6.67845 6.75277 6.95714 7.14905 7.67853 7.80362 8.13694 8.16897 8.27531 8.68648 9.26071 9.81612 11.30441 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.010567 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.928604 B = 2649.090196 C = 3346.571442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.060 0.940 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.626 5.626 14 C 0.045 3.955 15 C -0.140 4.140 16 C -0.155 4.155 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.100 4.100 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.257 0.743 26 H 0.329 0.671 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 4.241 12.995 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.522 4.522 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.255 5.255 14 C -0.047 4.047 15 C -0.200 4.200 16 C -0.192 4.192 17 C -0.118 4.118 18 C -0.169 4.169 19 C -0.157 4.157 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.148 0.852 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.361 4.076 12.574 13.428 hybrid contribution 0.082 0.310 0.076 0.330 sum -2.279 4.386 12.651 13.582 Atomic orbital electron populations 1.22617 0.99293 1.00906 1.00915 1.21737 0.89923 0.97846 0.92026 0.92150 1.19106 0.96113 0.95442 0.89643 1.21116 0.91963 1.32560 1.06536 0.92477 1.24995 0.97735 0.96093 0.96156 1.69953 1.35126 1.37153 1.12383 0.86758 0.86762 0.77897 0.77114 1.20395 1.21690 1.20614 1.60370 1.47593 1.14414 1.03083 1.21559 0.89567 0.97540 0.96052 1.21900 0.97918 0.99604 1.00550 1.23369 0.99014 0.95804 1.01055 1.21678 1.02238 0.96985 0.90904 1.21358 1.01197 1.00206 0.94100 1.21123 0.98958 0.93672 1.01986 0.92609 0.93120 0.94121 0.96527 0.96775 0.93387 0.85243 0.92931 0.92520 0.92371 0.87458 0.89970 0.92778 0.92579 0.92927 0.91021 0.93891 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.01 37.16 0.33 -2.72 16 2 C 0.09 1.91 2.19 -67.71 -0.15 1.76 16 3 H 0.06 1.29 7.64 -51.93 -0.40 0.89 16 4 C 0.03 0.89 4.65 -27.89 -0.13 0.76 16 5 C -0.48 -13.63 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.59 6.40 -52.49 -0.34 1.25 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 N -0.63 -11.75 5.53 -93.04 -0.51 -12.26 16 14 C 0.05 0.73 2.02 -131.60 -0.27 0.47 16 15 C -0.14 -1.92 8.26 37.16 0.31 -1.61 16 16 C -0.16 -2.58 9.44 -26.69 -0.25 -2.84 16 17 C -0.12 -1.76 2.70 -154.47 -0.42 -2.18 16 18 C -0.11 -1.33 8.57 37.16 0.32 -1.02 16 19 C -0.10 -1.58 9.31 37.16 0.35 -1.24 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.05 0.84 8.01 -51.93 -0.42 0.42 16 22 H 0.04 0.61 6.24 -51.93 -0.32 0.28 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.33 5.79 8.29 -39.29 -0.33 5.46 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.69 6.52 -51.93 -0.34 0.35 16 29 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 30 H 0.11 2.11 6.71 -51.93 -0.35 1.77 16 31 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 34 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 35 H 0.07 1.34 7.90 -51.93 -0.41 0.93 16 36 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -29.74 293.02 -7.23 -36.98 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.54 Total: 1.82 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.31 Total: -21.21 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.22 Total: -39.30 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.74 -7.23 -36.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701962509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.955 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds