Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46862 * 2 1 4 4 C 1.52993 * 109.47386 * 239.99446 * 2 1 3 5 5 C 1.50702 * 109.47215 * 174.99977 * 4 2 1 6 6 H 1.07999 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00183 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99801 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47191 * 60.00459 * 9 7 5 11 11 H 1.48508 * 109.46913 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47590 * 300.00155 * 9 7 5 13 13 N 1.46910 * 109.46865 * 119.99714 * 2 1 3 14 14 C 1.46898 * 110.99732 * 262.26532 * 13 2 1 15 15 C 1.53000 * 115.55113 * 63.86949 * 14 13 2 16 16 C 1.53004 * 117.49874 * 278.19349 * 14 13 2 17 17 C 1.53002 * 117.49468 * 209.53690 * 14 13 2 18 18 C 1.53009 * 117.49649 * 214.97865 * 17 14 13 19 19 C 1.52996 * 117.50068 * 359.97385 * 17 14 13 20 20 H 1.09005 * 109.47073 * 65.77447 * 1 2 3 21 21 H 1.09007 * 109.46947 * 185.76858 * 1 2 3 22 22 H 1.08993 * 109.47636 * 305.76649 * 1 2 3 23 23 H 1.08994 * 109.47834 * 295.00459 * 4 2 1 24 24 H 1.09002 * 109.47191 * 55.00368 * 4 2 1 25 25 H 0.97002 * 120.00119 * 180.02562 * 8 7 5 26 26 H 1.00899 * 111.00096 * 26.21858 * 13 2 1 27 27 H 1.08998 * 109.47298 * 54.45158 * 15 14 13 28 28 H 1.08998 * 109.47230 * 174.45260 * 15 14 13 29 29 H 1.08998 * 109.46967 * 294.45040 * 15 14 13 30 30 H 1.08996 * 117.50005 * 0.02562 * 16 14 13 31 31 H 1.08999 * 117.49820 * 145.02469 * 16 14 13 32 32 H 1.09000 * 109.46611 * 60.00414 * 18 17 14 33 33 H 1.09003 * 109.46939 * 179.97438 * 18 17 14 34 34 H 1.08993 * 109.46867 * 300.00250 * 18 17 14 35 35 H 1.09001 * 109.46720 * 60.00793 * 19 17 14 36 36 H 1.08999 * 109.47243 * 180.02562 * 19 17 14 37 37 H 1.08994 * 109.47742 * 300.00441 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1928 -2.3581 8 7 3.5765 -1.8363 -3.3003 9 14 6.0921 -1.0603 -2.4370 10 1 6.6846 -1.6863 -1.2278 11 1 6.5872 -1.7605 -3.6494 12 1 6.4845 0.3707 -2.4963 13 7 2.0196 -0.6925 1.1996 14 6 2.3691 0.2671 2.2555 15 6 1.2068 1.0973 2.8037 16 6 3.7408 0.9399 2.1729 17 6 3.4760 -0.1313 3.2338 18 6 3.3360 0.3317 4.6855 19 6 4.1336 -1.4987 3.0379 20 1 -0.3633 0.4217 -0.9372 21 1 -0.3633 -1.0225 0.1033 22 1 -0.3634 0.6006 0.8338 23 1 1.7517 -1.7715 -1.2055 24 1 1.6055 -0.2619 -2.1369 25 1 4.0608 -2.2431 -4.0357 26 1 1.3434 -1.3642 1.5307 27 1 0.4116 0.4319 3.1398 28 1 1.5547 1.7002 3.6425 29 1 0.8259 1.7515 2.0195 30 1 4.3837 0.6709 1.3349 31 1 3.8152 1.9740 2.5095 32 1 2.4173 -0.0740 5.1092 33 1 4.1896 -0.0222 5.2636 34 1 3.3012 1.4206 4.7177 35 1 4.5927 -1.5428 2.0502 36 1 4.8977 -1.6471 3.8009 37 1 3.3790 -2.2805 3.1230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701962509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = -14.188677 kcal Electronic energy + Delta-G solvation = -14840.949574 eV Core-core repulsion = 12617.447292 eV Total energy + Delta-G solvation = -2223.502282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23411 -36.96025 -34.55461 -31.62553 -29.80026 -29.31770 -28.32006 -27.53525 -25.00554 -22.07618 -20.67670 -19.24702 -18.31399 -16.66299 -16.48482 -15.66002 -15.51978 -14.74342 -14.51436 -14.32910 -13.93101 -13.76486 -13.49825 -13.19343 -13.15573 -13.01472 -12.77646 -12.69381 -12.59161 -12.42348 -12.27872 -11.87752 -11.81770 -11.26238 -11.04612 -10.58721 -10.47663 -10.08390 -8.97244 -8.08270 -6.11863 1.38615 1.41575 1.48633 2.46635 2.82887 3.23065 3.36657 3.91052 3.98200 4.21175 4.29785 4.33671 4.48269 4.56510 4.65975 4.86677 4.88612 4.92737 4.94534 5.01113 5.08483 5.13197 5.20584 5.21855 5.26059 5.34051 5.35205 5.43303 5.54775 5.69745 5.76044 5.92940 6.39529 6.59777 6.83428 7.02266 7.52777 9.04047 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.010567 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.928604 B = 2649.090196 C = 3346.571442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 H 0.050 0.950 4 C 0.039 3.961 5 C -0.491 4.491 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.645 5.645 14 C 0.038 3.962 15 C -0.133 4.133 16 C -0.171 4.171 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.099 4.099 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.069 0.931 23 H -0.012 1.012 24 H -0.013 1.013 25 H 0.257 0.743 26 H 0.336 0.664 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 5.158 15.435 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 H 0.068 0.932 4 C 0.001 3.999 5 C -0.529 4.529 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.275 5.275 14 C -0.054 4.054 15 C -0.192 4.192 16 C -0.209 4.209 17 C -0.105 4.105 18 C -0.163 4.163 19 C -0.157 4.157 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.006 0.994 24 H 0.005 0.995 25 H 0.066 0.934 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.371 5.003 15.034 16.021 hybrid contribution 0.101 -0.004 -0.683 0.690 sum -2.269 4.999 14.351 15.366 Atomic orbital electron populations 1.22478 0.96413 1.01793 1.01982 1.21322 0.92111 0.96151 0.90520 0.93197 1.19006 0.95134 0.94084 0.91659 1.21464 0.93359 1.31852 1.06220 0.92516 1.25844 1.02625 0.95937 0.95943 1.70091 1.36979 1.38307 1.13094 0.85706 0.81021 0.78316 0.77197 1.19811 1.21270 1.19561 1.60118 1.48026 1.15649 1.03696 1.21728 0.90383 0.97492 0.95802 1.21833 0.96941 0.99451 1.00951 1.23318 0.99112 0.97471 1.00975 1.21805 1.00457 0.95699 0.92511 1.21358 1.02449 1.01087 0.91392 1.21091 0.99517 0.94613 1.00430 0.92995 0.92709 0.91166 0.99370 0.99474 0.93407 0.84473 0.91685 0.90409 0.92904 0.91445 0.87903 0.91426 0.91387 0.91667 0.94928 0.91659 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 9.01 71.98 0.65 -4.91 16 2 C 0.11 4.45 2.19 44.91 0.10 4.55 16 3 H 0.05 2.14 7.64 -2.39 -0.02 2.12 16 4 C 0.04 2.08 4.65 29.85 0.14 2.22 16 5 C -0.49 -28.54 8.84 25.60 0.23 -28.31 16 6 H 0.06 3.25 6.40 -2.91 -0.02 3.23 16 7 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 8 N -0.94 -59.49 13.29 21.45 0.28 -59.20 16 9 Si 0.95 46.73 29.54 68.60 2.03 48.76 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.65 -24.05 5.53 -448.28 -2.48 -26.53 16 14 C 0.04 1.16 2.02 3.53 0.01 1.17 16 15 C -0.13 -3.17 8.26 71.98 0.59 -2.58 16 16 C -0.17 -5.56 9.44 30.62 0.29 -5.27 16 17 C -0.10 -2.91 2.70 -52.15 -0.14 -3.05 16 18 C -0.11 -2.11 8.57 71.99 0.62 -1.49 16 19 C -0.10 -3.04 9.31 71.98 0.67 -2.37 16 20 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 21 H 0.05 1.76 8.01 -2.38 -0.02 1.74 16 22 H 0.07 1.91 6.24 -2.39 -0.01 1.90 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.34 11.55 8.29 -89.69 -0.74 10.80 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.54 6.52 -2.39 -0.02 1.53 16 29 H 0.05 1.32 6.91 -2.39 -0.02 1.31 16 30 H 0.07 2.73 6.71 -2.39 -0.02 2.72 16 31 H 0.10 2.84 8.05 -2.39 -0.02 2.82 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 34 H 0.06 1.16 7.22 -2.39 -0.02 1.14 16 35 H 0.03 1.23 7.90 -2.39 -0.02 1.21 16 36 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.82 293.02 3.72 -62.10 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.28 Total: 14.93 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.61 Total: -40.05 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.19 Total: -85.73 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -65.82 3.72 -62.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701962509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.910 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds