Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.54949 * 2 1 4 4 C 1.52990 * 117.50284 * 214.28734 * 2 1 3 5 5 C 1.52998 * 117.49975 * 145.66021 * 2 1 3 6 6 C 1.53003 * 117.49709 * 359.97438 * 5 2 1 7 7 C 1.52992 * 117.50372 * 214.98401 * 5 2 1 8 8 N 1.46901 * 109.47599 * 180.02562 * 7 5 2 9 9 C 1.46898 * 111.00146 * 66.03966 * 8 7 5 10 10 C 1.46896 * 111.00177 * 190.00100 * 8 7 5 11 11 C 1.53002 * 109.46836 * 169.99493 * 10 8 7 12 12 C 1.50706 * 109.47153 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 H 1.09001 * 109.47653 * 274.33749 * 1 2 3 21 21 H 1.09007 * 109.47320 * 34.33626 * 1 2 3 22 22 H 1.08998 * 109.47009 * 154.33281 * 1 2 3 23 23 H 1.09003 * 117.50479 * 145.02311 * 4 2 1 24 24 H 1.09001 * 117.49685 * 0.02562 * 4 2 1 25 25 H 1.09005 * 109.46776 * 299.90532 * 6 5 2 26 26 H 1.08998 * 109.47209 * 59.90787 * 6 5 2 27 27 H 1.08994 * 109.47170 * 179.91088 * 6 5 2 28 28 H 1.09002 * 109.47441 * 60.00085 * 7 5 2 29 29 H 1.09005 * 109.47321 * 300.00109 * 7 5 2 30 30 H 1.09003 * 109.47497 * 183.95387 * 9 8 7 31 31 H 1.09002 * 109.47343 * 303.96572 * 9 8 7 32 32 H 1.09005 * 109.46708 * 63.95945 * 9 8 7 33 33 H 1.08999 * 109.47051 * 50.00183 * 10 8 7 34 34 H 1.08993 * 109.47142 * 289.99684 * 10 8 7 35 35 H 1.09004 * 109.47178 * 60.00344 * 11 10 8 36 36 H 1.08993 * 109.47411 * 300.00026 * 11 10 8 37 37 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2364 -1.1206 0.7655 6 6 1.3588 -2.1551 1.4730 7 6 3.5489 -0.7753 1.4719 8 7 4.0717 -1.9712 2.1459 9 6 4.4598 -2.9982 1.1699 10 6 5.1969 -1.6298 3.0264 11 6 5.5517 -2.8398 3.8929 12 6 6.7065 -2.4897 4.7959 13 1 7.1432 -1.5028 4.7559 14 6 7.2053 -3.4293 5.6729 15 7 6.6700 -4.6295 5.7253 16 14 8.6362 -2.9952 6.7926 17 1 8.9768 -4.1677 7.6378 18 1 9.8134 -2.6202 5.9686 19 1 8.2558 -1.8526 7.6613 20 1 -0.3634 0.0777 1.0247 21 1 -0.3634 0.8486 -0.5797 22 1 -0.3633 -0.9262 -0.4451 23 1 3.1716 -0.8756 -1.2678 24 1 1.6113 -1.8587 -1.2678 25 1 0.7310 -1.6552 2.2108 26 1 0.7279 -2.6583 0.7403 27 1 1.9921 -2.8885 1.9720 28 1 3.3700 0.0082 2.2083 29 1 4.2752 -0.4253 0.7383 30 1 4.7773 -3.8983 1.6964 31 1 3.6084 -3.2323 0.5307 32 1 5.2818 -2.6261 0.5583 33 1 4.9161 -0.7939 3.6672 34 1 6.0596 -1.3503 2.4218 35 1 5.8325 -3.6757 3.2522 36 1 4.6890 -3.1192 4.4976 37 1 5.9269 -4.8549 5.1440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704037815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = 6.939660 kcal Electronic energy + Delta-G solvation = -14245.256270 eV Core-core repulsion = 12022.670181 eV Total energy + Delta-G solvation = -2222.586088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.09624 -36.39521 -33.28394 -30.17370 -28.63890 -27.83950 -27.01965 -24.76442 -22.61865 -21.02788 -20.07574 -18.42312 -16.73420 -15.55561 -15.16573 -14.78383 -13.79272 -13.72844 -13.54045 -13.43503 -12.95128 -12.49400 -12.37510 -11.95468 -11.81165 -11.58201 -11.42176 -11.23678 -11.12695 -10.91675 -10.76236 -10.13467 -9.99071 -9.90171 -9.55550 -9.36587 -8.52728 -8.27232 -7.75849 -6.32222 -4.00578 3.45949 3.48273 3.66938 3.72192 4.34952 4.59843 4.75077 4.87072 4.96672 5.24055 5.28344 5.45611 5.61628 5.68606 5.72113 5.74171 5.78804 5.85334 5.93115 5.96234 6.07086 6.18104 6.22293 6.24557 6.33441 6.39755 6.45005 6.68803 6.86232 7.34158 7.45987 7.71946 7.76687 8.28730 8.50734 8.93103 9.71659 11.08960 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068880 B = 0.005457 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.406315 B = 5129.711520 C = 5196.548839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.154 4.154 3 H 0.099 0.901 4 C -0.177 4.177 5 C -0.107 4.107 6 C -0.109 4.109 7 C 0.091 3.909 8 N -0.538 5.538 9 C 0.027 3.973 10 C 0.069 3.931 11 C 0.016 3.984 12 C -0.603 4.603 13 H 0.046 0.954 14 C 0.016 3.984 15 N -0.913 5.913 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.288 1.288 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.008 0.992 36 H 0.015 0.985 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 7.211 -11.430 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.173 4.173 3 H 0.117 0.883 4 C -0.214 4.214 5 C -0.108 4.108 6 C -0.166 4.166 7 C -0.038 4.038 8 N -0.261 5.261 9 C -0.121 4.121 10 C -0.057 4.057 11 C -0.022 4.022 12 C -0.642 4.642 13 H 0.065 0.935 14 C -0.188 4.188 15 N -0.549 5.549 16 Si 0.897 3.103 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.215 1.215 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.102 6.411 -9.944 14.927 hybrid contribution -0.266 1.099 -1.847 2.165 sum -9.368 7.509 -11.791 16.828 Atomic orbital electron populations 1.21295 0.93013 1.01427 1.01727 1.22411 0.95152 0.94401 1.05309 0.88327 1.23292 1.02141 1.01475 0.94506 1.21578 0.97502 0.99452 0.92257 1.21266 0.98189 0.97934 0.99260 1.21584 0.92792 0.93034 0.96371 1.62050 1.34863 1.09365 1.19863 1.22381 0.98610 0.96449 0.94708 1.22193 0.88972 1.00499 0.94073 1.19212 0.96357 0.92521 0.94081 1.22020 1.17953 1.00705 1.23536 0.93534 1.25816 1.01584 0.93511 0.97899 1.70767 1.24419 1.20442 1.39284 0.83550 0.75172 0.75574 0.75984 1.20758 1.21553 1.21461 0.92177 0.92659 0.92674 0.89404 0.89094 0.92834 0.93764 0.89702 0.90919 0.95474 0.90971 0.91985 0.96606 0.92080 0.96198 0.97391 0.96631 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.21 37.16 0.34 -0.78 16 2 C -0.15 -1.72 6.13 -90.63 -0.56 -2.28 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.18 -2.04 9.32 -26.74 -0.25 -2.29 16 5 C -0.11 -1.41 1.55 -154.51 -0.24 -1.65 16 6 C -0.11 -1.46 8.30 37.16 0.31 -1.16 16 7 C 0.09 1.40 5.09 -3.83 -0.02 1.38 16 8 N -0.54 -9.93 3.52 -242.92 -0.85 -10.79 16 9 C 0.03 0.46 8.59 60.06 0.52 0.98 16 10 C 0.07 1.52 4.90 -3.83 -0.02 1.50 16 11 C 0.02 0.41 4.21 -27.88 -0.12 0.30 16 12 C -0.60 -17.60 9.11 -34.44 -0.31 -17.91 16 13 H 0.05 1.33 7.74 -52.49 -0.41 0.93 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 15 N -0.91 -28.48 13.65 55.43 0.76 -27.73 16 16 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 21 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 22 H 0.05 0.51 7.77 -51.93 -0.40 0.11 16 23 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 24 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 25 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 26 H 0.04 0.52 7.77 -51.93 -0.40 0.12 16 27 H 0.08 1.32 6.07 -51.93 -0.32 1.01 16 28 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.03 0.42 7.88 -51.93 -0.41 0.01 16 30 H 0.07 1.37 6.47 -51.93 -0.34 1.03 16 31 H 0.06 0.94 6.41 -51.93 -0.33 0.60 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 34 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.01 0.22 6.42 -51.93 -0.33 -0.12 16 36 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 37 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -30.41 292.51 -7.84 -38.25 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.62 Total: -3.21 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.44 Total: -21.55 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.10 Total: -38.51 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.41 -7.84 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704037815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.188 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds