Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.54949 * 2 1 4 4 C 1.52990 * 117.50284 * 214.28734 * 2 1 3 5 5 C 1.52998 * 117.49975 * 145.66021 * 2 1 3 6 6 C 1.53003 * 117.49709 * 359.97438 * 5 2 1 7 7 C 1.52992 * 117.50372 * 214.98401 * 5 2 1 8 8 N 1.46901 * 109.47599 * 180.02562 * 7 5 2 9 9 C 1.46898 * 111.00146 * 66.03966 * 8 7 5 10 10 C 1.46896 * 111.00177 * 190.00100 * 8 7 5 11 11 C 1.53002 * 109.46836 * 169.99493 * 10 8 7 12 12 C 1.50706 * 109.47153 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 H 1.09001 * 109.47653 * 274.33749 * 1 2 3 21 21 H 1.09007 * 109.47320 * 34.33626 * 1 2 3 22 22 H 1.08998 * 109.47009 * 154.33281 * 1 2 3 23 23 H 1.09003 * 117.50479 * 145.02311 * 4 2 1 24 24 H 1.09001 * 117.49685 * 0.02562 * 4 2 1 25 25 H 1.09005 * 109.46776 * 299.90532 * 6 5 2 26 26 H 1.08998 * 109.47209 * 59.90787 * 6 5 2 27 27 H 1.08994 * 109.47170 * 179.91088 * 6 5 2 28 28 H 1.09002 * 109.47441 * 60.00085 * 7 5 2 29 29 H 1.09005 * 109.47321 * 300.00109 * 7 5 2 30 30 H 1.09003 * 109.47497 * 183.95387 * 9 8 7 31 31 H 1.09002 * 109.47343 * 303.96572 * 9 8 7 32 32 H 1.09005 * 109.46708 * 63.95945 * 9 8 7 33 33 H 1.08999 * 109.47051 * 50.00183 * 10 8 7 34 34 H 1.08993 * 109.47142 * 289.99684 * 10 8 7 35 35 H 1.09004 * 109.47178 * 60.00344 * 11 10 8 36 36 H 1.08993 * 109.47411 * 300.00026 * 11 10 8 37 37 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2364 -1.1206 0.7655 6 6 1.3588 -2.1551 1.4730 7 6 3.5489 -0.7753 1.4719 8 7 4.0717 -1.9712 2.1459 9 6 4.4598 -2.9982 1.1699 10 6 5.1969 -1.6298 3.0264 11 6 5.5517 -2.8398 3.8929 12 6 6.7065 -2.4897 4.7959 13 1 7.1432 -1.5028 4.7559 14 6 7.2053 -3.4293 5.6729 15 7 6.6700 -4.6295 5.7253 16 14 8.6362 -2.9952 6.7926 17 1 8.9768 -4.1677 7.6378 18 1 9.8134 -2.6202 5.9686 19 1 8.2558 -1.8526 7.6613 20 1 -0.3634 0.0777 1.0247 21 1 -0.3634 0.8486 -0.5797 22 1 -0.3633 -0.9262 -0.4451 23 1 3.1716 -0.8756 -1.2678 24 1 1.6113 -1.8587 -1.2678 25 1 0.7310 -1.6552 2.2108 26 1 0.7279 -2.6583 0.7403 27 1 1.9921 -2.8885 1.9720 28 1 3.3700 0.0082 2.2083 29 1 4.2752 -0.4253 0.7383 30 1 4.7773 -3.8983 1.6964 31 1 3.6084 -3.2323 0.5307 32 1 5.2818 -2.6261 0.5583 33 1 4.9161 -0.7939 3.6672 34 1 6.0596 -1.3503 2.4218 35 1 5.8325 -3.6757 3.2522 36 1 4.6890 -3.1192 4.4976 37 1 5.9269 -4.8549 5.1440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704037815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = -10.278472 kcal Electronic energy + Delta-G solvation = -14246.002904 eV Core-core repulsion = 12022.670181 eV Total energy + Delta-G solvation = -2223.332723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21417 -37.86046 -35.41642 -31.80678 -29.97646 -28.87842 -28.25668 -26.64763 -24.45005 -22.18052 -21.63785 -19.47628 -18.90364 -16.79459 -16.55986 -16.28246 -15.64120 -15.09956 -15.03367 -14.57443 -14.22434 -14.05151 -13.77129 -13.50819 -12.93141 -12.84668 -12.74156 -12.71886 -12.52543 -12.26198 -12.15311 -11.93990 -11.84133 -11.65341 -10.81182 -10.61037 -10.52974 -10.35197 -9.26323 -8.69900 -6.39958 1.52477 1.61455 1.80918 2.55816 2.74688 3.04869 3.16050 3.75911 3.90644 3.95190 4.13412 4.21344 4.32781 4.44809 4.49056 4.50215 4.67340 4.74996 4.86230 4.89774 4.91554 4.95211 4.98057 5.05483 5.12773 5.20121 5.24302 5.26411 5.41592 5.43781 5.59351 5.87815 6.15842 6.19119 6.21684 6.57347 7.42671 8.71273 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068880 B = 0.005457 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.406315 B = 5129.711520 C = 5196.548839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.127 4.127 6 C -0.104 4.104 7 C 0.093 3.907 8 N -0.545 5.545 9 C 0.034 3.966 10 C 0.085 3.915 11 C 0.022 3.978 12 C -0.622 4.622 13 H 0.050 0.950 14 C -0.037 4.037 15 N -0.936 5.936 16 Si 1.120 2.880 17 H -0.282 1.282 18 H -0.269 1.269 19 H -0.268 1.268 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.017 0.983 35 H -0.008 1.008 36 H -0.011 1.011 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 8.600 -12.375 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.160 4.160 3 H 0.121 0.879 4 C -0.206 4.206 5 C -0.127 4.127 6 C -0.161 4.161 7 C -0.035 4.035 8 N -0.268 5.268 9 C -0.115 4.115 10 C -0.043 4.043 11 C -0.016 4.016 12 C -0.661 4.661 13 H 0.068 0.932 14 C -0.235 4.235 15 N -0.573 5.573 16 Si 0.940 3.060 17 H -0.208 1.208 18 H -0.194 1.194 19 H -0.193 1.193 20 H 0.076 0.924 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.121 0.879 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.010 0.990 36 H 0.007 0.993 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.373 7.816 -10.920 16.376 hybrid contribution -0.252 0.671 -1.604 1.757 sum -9.625 8.487 -12.524 17.931 Atomic orbital electron populations 1.21321 0.91684 1.02413 1.01986 1.22517 0.96148 0.94068 1.03241 0.87853 1.23356 1.02513 1.01771 0.92937 1.21459 0.96736 1.01261 0.93291 1.21177 0.97931 0.97453 0.99546 1.21615 0.94041 0.91512 0.96333 1.61965 1.33172 1.11015 1.20688 1.22318 0.99704 0.95089 0.94343 1.21847 0.90220 0.98081 0.94139 1.19076 0.94652 0.93932 0.93907 1.22457 1.18648 1.00943 1.24012 0.93171 1.27473 1.03812 0.92850 0.99342 1.70908 1.24816 1.21737 1.39863 0.82916 0.72523 0.75941 0.74605 1.20772 1.19378 1.19340 0.92380 0.91116 0.92210 0.89208 0.87944 0.92967 0.92058 0.92410 0.91252 0.94976 0.93466 0.89555 0.96233 0.92087 0.96439 0.99017 0.99261 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.21 71.98 0.66 -1.23 16 2 C -0.14 -2.77 6.13 -10.80 -0.07 -2.83 16 3 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.17 -3.42 9.32 30.59 0.29 -3.13 16 5 C -0.13 -3.11 1.55 -52.18 -0.08 -3.19 16 6 C -0.10 -2.65 8.30 71.98 0.60 -2.06 16 7 C 0.09 2.77 5.09 86.30 0.44 3.21 16 8 N -0.54 -20.15 3.52 -922.47 -3.25 -23.39 16 9 C 0.03 1.16 8.59 127.69 1.10 2.25 16 10 C 0.08 3.75 4.90 86.30 0.42 4.17 16 11 C 0.02 1.19 4.21 29.85 0.13 1.31 16 12 C -0.62 -36.73 9.11 25.60 0.23 -36.50 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 15 N -0.94 -59.61 13.65 21.45 0.29 -59.32 16 16 Si 1.12 51.09 29.90 68.60 2.05 53.14 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H 0.06 0.98 8.02 -2.39 -0.02 0.96 16 21 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 22 H 0.06 0.92 7.77 -2.39 -0.02 0.90 16 23 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 24 H 0.10 1.85 7.96 -2.39 -0.02 1.84 16 25 H 0.05 1.31 8.02 -2.38 -0.02 1.29 16 26 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 27 H 0.06 1.79 6.07 -2.39 -0.01 1.77 16 28 H 0.07 2.09 7.93 -2.39 -0.02 2.08 16 29 H 0.03 0.93 7.88 -2.38 -0.02 0.91 16 30 H 0.05 1.84 6.47 -2.39 -0.02 1.83 16 31 H 0.09 2.53 6.41 -2.39 -0.02 2.51 16 32 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 2.67 7.93 -2.39 -0.02 2.65 16 34 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 35 H -0.01 -0.48 6.42 -2.39 -0.02 -0.50 16 36 H -0.01 -0.65 8.00 -2.39 -0.02 -0.67 16 37 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 Total: -1.00 -65.47 292.51 4.38 -61.09 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.10 Total: 8.24 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.18 Total: -39.76 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.95 Total: -82.71 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -65.47 4.38 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704037815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.808 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds