Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.56026 * 2 1 4 4 C 1.52995 * 117.50203 * 145.68391 * 2 1 3 5 5 C 1.52989 * 60.00023 * 107.49244 * 4 2 1 6 6 C 1.53005 * 117.49906 * 107.51442 * 5 4 2 7 7 C 1.53004 * 117.49976 * 252.51125 * 5 4 2 8 8 N 1.46897 * 109.46970 * 290.52254 * 7 5 4 9 9 C 1.46904 * 110.99668 * 198.43561 * 8 7 5 10 10 C 1.46893 * 111.00114 * 74.48406 * 8 7 5 11 11 C 1.53000 * 109.47548 * 189.99863 * 10 8 7 12 12 C 1.50688 * 109.47691 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99812 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99732 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47544 * 59.99990 * 16 14 12 18 18 H 1.48506 * 109.46769 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47157 * 299.99426 * 16 14 12 20 20 H 1.09001 * 109.46362 * 205.68940 * 1 2 3 21 21 H 1.08992 * 109.46914 * 325.68966 * 1 2 3 22 22 H 1.08998 * 109.46727 * 85.69172 * 1 2 3 23 23 H 1.09005 * 117.49802 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.52367 * 214.97427 * 4 2 1 25 25 H 1.08998 * 109.46888 * 211.53918 * 6 5 4 26 26 H 1.08992 * 109.46949 * 331.53817 * 6 5 4 27 27 H 1.09002 * 109.47321 * 91.53719 * 6 5 4 28 28 H 1.09008 * 109.46821 * 170.52191 * 7 5 4 29 29 H 1.08992 * 109.47057 * 50.52622 * 7 5 4 30 30 H 1.09004 * 109.47031 * 54.19099 * 9 8 7 31 31 H 1.09000 * 109.47074 * 294.18706 * 9 8 7 32 32 H 1.09006 * 109.46876 * 174.18871 * 9 8 7 33 33 H 1.08996 * 109.47045 * 309.99798 * 10 8 7 34 34 H 1.09005 * 109.47367 * 69.99526 * 10 8 7 35 35 H 1.09008 * 109.46693 * 300.00335 * 11 10 8 36 36 H 1.09005 * 109.47061 * 59.99476 * 11 10 8 37 37 H 0.97000 * 119.99779 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7648 6 6 3.5493 -0.7764 -1.4713 7 6 1.3590 -2.1563 -1.4713 8 7 1.9226 -3.4973 -1.2666 9 6 1.3938 -4.4470 -2.2548 10 6 1.6746 -3.9692 0.1022 11 6 2.4806 -5.2448 0.3558 12 6 2.2267 -5.7286 1.7602 13 1 1.5577 -5.1809 2.4074 14 6 2.8485 -6.8706 2.2189 15 7 3.6627 -7.5378 1.4307 16 14 2.5342 -7.4698 3.9601 17 1 1.0872 -7.7556 4.1317 18 1 3.3155 -8.7086 4.2057 19 1 2.9500 -6.4220 4.9268 20 1 -0.3632 -0.9261 0.4455 21 1 -0.3633 0.8488 0.5792 22 1 -0.3633 0.0772 -1.0248 23 1 1.6113 -1.8586 1.2681 24 1 3.1717 -0.8754 1.2684 25 1 3.3333 -0.2774 -2.4160 26 1 4.1400 -0.1150 -0.8378 27 1 4.1095 -1.6914 -1.6635 28 1 1.3242 -1.9357 -2.5382 29 1 0.3505 -2.1192 -1.0596 30 1 1.5614 -4.0574 -3.2589 31 1 0.3247 -4.5834 -2.0917 32 1 1.9029 -5.4047 -2.1469 33 1 1.9786 -3.2002 0.8123 34 1 0.6124 -4.1797 0.2272 35 1 2.1766 -6.0138 -0.3544 36 1 3.5428 -5.0343 0.2308 37 1 4.0998 -8.3414 1.7533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704037817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = 16.968981 kcal Electronic energy + Delta-G solvation = -14530.611700 eV Core-core repulsion = 12308.460515 eV Total energy + Delta-G solvation = -2222.151184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.07280 -35.94345 -32.94474 -30.19838 -29.55704 -27.02666 -26.83271 -25.19178 -22.53855 -20.99206 -19.81476 -18.29485 -16.27922 -15.31208 -14.99902 -14.59302 -14.15407 -14.01393 -13.38959 -12.98618 -12.68628 -12.21164 -12.19701 -12.06341 -11.88791 -11.56255 -11.34073 -11.26328 -10.95611 -10.75877 -10.61310 -10.47044 -9.83220 -9.47489 -9.37467 -9.06752 -8.98899 -8.27582 -7.58913 -5.95564 -3.97618 3.35260 3.39560 3.41879 3.87688 4.46926 4.73388 4.87742 5.01473 5.17756 5.32643 5.40122 5.42728 5.70586 5.81017 5.84407 5.85132 5.97863 6.03779 6.08566 6.12622 6.16261 6.18874 6.38149 6.42875 6.47516 6.52998 6.60001 6.67896 7.11114 7.60671 7.66831 7.86433 7.98235 8.15255 8.49379 9.09814 9.65547 11.15887 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.007524 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.357111 B = 3720.313157 C = 4043.877827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.159 4.159 3 H 0.098 0.902 4 C -0.170 4.170 5 C -0.108 4.108 6 C -0.106 4.106 7 C 0.088 3.912 8 N -0.538 5.538 9 C 0.028 3.972 10 C 0.045 3.955 11 C 0.030 3.970 12 C -0.521 4.521 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.023 0.977 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 12.856 -5.173 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 H 0.116 0.884 4 C -0.207 4.207 5 C -0.109 4.109 6 C -0.163 4.163 7 C -0.040 4.040 8 N -0.261 5.261 9 C -0.121 4.121 10 C -0.081 4.081 11 C -0.008 4.008 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.125 0.875 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.676 12.715 -5.257 14.242 hybrid contribution -0.988 -0.518 1.114 1.577 sum -4.665 12.197 -4.143 13.700 Atomic orbital electron populations 1.21338 0.93440 1.01647 1.01315 1.22481 0.94923 0.94308 1.06090 0.88371 1.23434 1.02566 1.00325 0.94369 1.21450 0.97816 0.97912 0.93689 1.21203 0.94715 1.01503 0.98878 1.21569 0.94528 0.88987 0.98926 1.61991 1.58321 1.00812 1.05010 1.22366 0.97129 0.97801 0.94780 1.22781 0.97621 1.00426 0.87245 1.19063 0.95670 0.90198 0.95849 1.21168 1.26853 1.09403 0.98533 0.92987 1.24984 0.95203 0.96717 0.97373 1.69962 1.29697 1.17749 1.35888 0.86687 0.78196 0.78132 0.85145 1.20355 1.21277 1.20235 0.92487 0.92623 0.92564 0.87541 0.89003 0.93125 0.93313 0.91049 0.91587 0.94866 0.92796 0.96631 0.90475 0.90093 0.96865 0.96750 0.95838 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.75 37.16 0.33 -1.07 16 2 C -0.16 -2.03 6.13 -90.62 -0.56 -2.59 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.17 -2.58 8.16 -26.74 -0.22 -2.79 16 5 C -0.11 -1.57 2.26 -154.51 -0.35 -1.92 16 6 C -0.11 -1.43 9.74 37.16 0.36 -1.07 16 7 C 0.09 1.37 4.75 -3.82 -0.02 1.35 16 8 N -0.54 -10.11 4.70 -242.91 -1.14 -11.26 16 9 C 0.03 0.48 9.26 60.07 0.56 1.04 16 10 C 0.05 0.99 4.60 -3.83 -0.02 0.97 16 11 C 0.03 0.79 4.90 -27.89 -0.14 0.65 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.11 1.78 5.70 -51.93 -0.30 1.49 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.94 7.82 -51.92 -0.41 0.53 16 29 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 30 H 0.05 0.80 7.94 -51.93 -0.41 0.38 16 31 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 32 H 0.08 1.49 6.56 -51.93 -0.34 1.15 16 33 H 0.08 1.72 3.75 -51.93 -0.19 1.52 16 34 H 0.01 0.29 8.11 -51.93 -0.42 -0.13 16 35 H 0.01 0.40 6.59 -51.92 -0.34 0.06 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -30.04 291.02 -7.95 -38.00 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.45 Total: -2.36 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.46 Total: -19.13 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.41 Total: -37.80 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.04 -7.95 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704037817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.964 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds