Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.56026 * 2 1 4 4 C 1.52995 * 117.50203 * 145.68391 * 2 1 3 5 5 C 1.52989 * 60.00023 * 107.49244 * 4 2 1 6 6 C 1.53005 * 117.49906 * 107.51442 * 5 4 2 7 7 C 1.53004 * 117.49976 * 252.51125 * 5 4 2 8 8 N 1.46897 * 109.46970 * 290.52254 * 7 5 4 9 9 C 1.46904 * 110.99668 * 198.43561 * 8 7 5 10 10 C 1.46893 * 111.00114 * 74.48406 * 8 7 5 11 11 C 1.53000 * 109.47548 * 189.99863 * 10 8 7 12 12 C 1.50688 * 109.47691 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00083 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99812 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99732 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47544 * 59.99990 * 16 14 12 18 18 H 1.48506 * 109.46769 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47157 * 299.99426 * 16 14 12 20 20 H 1.09001 * 109.46362 * 205.68940 * 1 2 3 21 21 H 1.08992 * 109.46914 * 325.68966 * 1 2 3 22 22 H 1.08998 * 109.46727 * 85.69172 * 1 2 3 23 23 H 1.09005 * 117.49802 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.52367 * 214.97427 * 4 2 1 25 25 H 1.08998 * 109.46888 * 211.53918 * 6 5 4 26 26 H 1.08992 * 109.46949 * 331.53817 * 6 5 4 27 27 H 1.09002 * 109.47321 * 91.53719 * 6 5 4 28 28 H 1.09008 * 109.46821 * 170.52191 * 7 5 4 29 29 H 1.08992 * 109.47057 * 50.52622 * 7 5 4 30 30 H 1.09004 * 109.47031 * 54.19099 * 9 8 7 31 31 H 1.09000 * 109.47074 * 294.18706 * 9 8 7 32 32 H 1.09006 * 109.46876 * 174.18871 * 9 8 7 33 33 H 1.08996 * 109.47045 * 309.99798 * 10 8 7 34 34 H 1.09005 * 109.47367 * 69.99526 * 10 8 7 35 35 H 1.09008 * 109.46693 * 300.00335 * 11 10 8 36 36 H 1.09005 * 109.47061 * 59.99476 * 11 10 8 37 37 H 0.97000 * 119.99779 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7648 6 6 3.5493 -0.7764 -1.4713 7 6 1.3590 -2.1563 -1.4713 8 7 1.9226 -3.4973 -1.2666 9 6 1.3938 -4.4470 -2.2548 10 6 1.6746 -3.9692 0.1022 11 6 2.4806 -5.2448 0.3558 12 6 2.2267 -5.7286 1.7602 13 1 1.5577 -5.1809 2.4074 14 6 2.8485 -6.8706 2.2189 15 7 3.6627 -7.5378 1.4307 16 14 2.5342 -7.4698 3.9601 17 1 1.0872 -7.7556 4.1317 18 1 3.3155 -8.7086 4.2057 19 1 2.9500 -6.4220 4.9268 20 1 -0.3632 -0.9261 0.4455 21 1 -0.3633 0.8488 0.5792 22 1 -0.3633 0.0772 -1.0248 23 1 1.6113 -1.8586 1.2681 24 1 3.1717 -0.8754 1.2684 25 1 3.3333 -0.2774 -2.4160 26 1 4.1400 -0.1150 -0.8378 27 1 4.1095 -1.6914 -1.6635 28 1 1.3242 -1.9357 -2.5382 29 1 0.3505 -2.1192 -1.0596 30 1 1.5614 -4.0574 -3.2589 31 1 0.3247 -4.5834 -2.0917 32 1 1.9029 -5.4047 -2.1469 33 1 1.9786 -3.2002 0.8123 34 1 0.6124 -4.1797 0.2272 35 1 2.1766 -6.0138 -0.3544 36 1 3.5428 -5.0343 0.2308 37 1 4.0998 -8.3414 1.7533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704037817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -1.081388 kcal Electronic energy + Delta-G solvation = -14531.394422 eV Core-core repulsion = 12308.460515 eV Total energy + Delta-G solvation = -2222.933907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30176 -37.42866 -35.08391 -31.88927 -30.86956 -28.28537 -28.08645 -27.01067 -24.34470 -22.19194 -21.51417 -19.49927 -18.44668 -16.64264 -16.57731 -16.22375 -15.62622 -15.52585 -14.85133 -14.34205 -13.96776 -13.86009 -13.67640 -13.31948 -13.19768 -12.94740 -12.88086 -12.74863 -12.54984 -12.41224 -12.20985 -11.90567 -11.61546 -11.26846 -11.20500 -10.60518 -10.45051 -10.30468 -9.09664 -8.19876 -6.31278 1.38583 1.42102 1.49996 2.39618 2.71580 3.13092 3.36905 3.80316 3.87906 4.01708 4.17271 4.35226 4.46198 4.47997 4.61296 4.64695 4.73194 4.85098 4.91439 4.97635 5.00118 5.03681 5.06009 5.10241 5.17406 5.22559 5.31010 5.44627 5.46651 5.52247 5.69357 5.81334 6.12811 6.36279 6.38290 6.86026 7.37556 8.92249 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.007524 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.357111 B = 3720.313157 C = 4043.877827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.194 4.194 5 C -0.121 4.121 6 C -0.102 4.102 7 C 0.089 3.911 8 N -0.550 5.550 9 C 0.029 3.971 10 C 0.063 3.937 11 C 0.039 3.961 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.041 0.959 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.008 0.992 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 14.539 -4.913 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 H 0.137 0.863 4 C -0.231 4.231 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.038 4.038 8 N -0.274 5.274 9 C -0.119 4.119 10 C -0.064 4.064 11 C 0.002 3.998 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.191 1.191 20 H 0.060 0.940 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.026 0.974 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.668 14.416 -5.009 15.959 hybrid contribution -0.672 -1.023 0.975 1.565 sum -5.340 13.393 -4.034 14.972 Atomic orbital electron populations 1.21382 0.92439 1.01701 1.02343 1.22572 0.95593 0.94113 1.02577 0.86334 1.23370 1.02891 1.01897 0.94893 1.21560 0.98655 0.98892 0.93050 1.21170 0.94003 1.00722 1.00007 1.21655 0.94672 0.87051 1.00432 1.61907 1.59370 1.02612 1.03476 1.22352 0.96926 0.96549 0.96051 1.22442 0.96100 0.98238 0.89644 1.18883 0.94221 0.91966 0.94753 1.21592 1.27166 1.09971 0.99573 0.92398 1.25962 0.94682 0.96783 1.02196 1.70106 1.30623 1.18245 1.38210 0.85511 0.78561 0.77758 0.79285 1.19193 1.20668 1.19074 0.94017 0.90753 0.91307 0.89681 0.89153 0.91092 0.92335 0.93458 0.89485 0.94564 0.89615 0.96084 0.93366 0.89476 0.97387 0.99192 0.99259 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.75 71.98 0.63 -1.84 16 2 C -0.13 -2.97 6.13 -10.80 -0.07 -3.03 16 3 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.19 -5.72 8.16 30.59 0.25 -5.47 16 5 C -0.12 -3.32 2.26 -52.18 -0.12 -3.44 16 6 C -0.10 -2.57 9.74 71.98 0.70 -1.87 16 7 C 0.09 2.63 4.75 86.31 0.41 3.04 16 8 N -0.55 -20.67 4.70 -922.44 -4.34 -25.01 16 9 C 0.03 1.02 9.26 127.69 1.18 2.20 16 10 C 0.06 2.79 4.60 86.30 0.40 3.19 16 11 C 0.04 2.18 4.90 29.84 0.15 2.33 16 12 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H 0.04 0.98 7.28 -2.39 -0.02 0.96 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.09 2.88 5.70 -2.38 -0.01 2.86 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 2.21 7.82 -2.38 -0.02 2.19 16 29 H 0.04 1.06 6.06 -2.39 -0.01 1.04 16 30 H 0.09 2.40 7.94 -2.39 -0.02 2.38 16 31 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.05 1.93 6.56 -2.38 -0.02 1.92 16 33 H 0.09 3.79 3.75 -2.39 -0.01 3.78 16 34 H 0.01 0.36 8.11 -2.38 -0.02 0.34 16 35 H -0.01 -0.61 6.59 -2.38 -0.02 -0.63 16 36 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -65.55 291.02 3.21 -62.34 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.01 Total: 9.65 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.23 Total: -36.18 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -4.05 Total: -82.98 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.55 3.21 -62.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704037817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.260 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds