Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 115.54778 * 2 1 4 4 C 1.53000 * 117.49792 * 145.66637 * 2 1 3 5 5 C 1.53002 * 60.02940 * 107.48056 * 4 2 1 6 6 C 1.53002 * 117.49773 * 252.51785 * 5 4 2 7 7 C 1.52999 * 117.49968 * 107.50530 * 5 4 2 8 8 N 1.46898 * 109.47542 * 111.38757 * 7 5 4 9 9 C 1.46901 * 110.99953 * 293.95315 * 8 7 5 10 10 C 1.46899 * 110.99794 * 169.99754 * 8 7 5 11 11 C 1.53002 * 109.46861 * 190.00009 * 10 8 7 12 12 C 1.50692 * 109.47204 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00209 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00316 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00131 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47199 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46913 * 119.99872 * 16 14 12 19 19 H 1.48498 * 109.47327 * 240.00028 * 16 14 12 20 20 H 1.08998 * 109.47616 * 325.72538 * 1 2 3 21 21 H 1.08996 * 109.47220 * 85.72823 * 1 2 3 22 22 H 1.09006 * 109.46853 * 205.72359 * 1 2 3 23 23 H 1.09002 * 117.49833 * 214.98161 * 4 2 1 24 24 H 1.09002 * 117.49953 * 359.97438 * 4 2 1 25 25 H 1.09005 * 109.47034 * 8.60952 * 6 5 4 26 26 H 1.08996 * 109.47323 * 128.60841 * 6 5 4 27 27 H 1.08997 * 109.47719 * 248.61411 * 6 5 4 28 28 H 1.09000 * 109.46660 * 231.39296 * 7 5 4 29 29 H 1.08997 * 109.47098 * 351.38476 * 7 5 4 30 30 H 1.09005 * 109.47108 * 60.00074 * 9 8 7 31 31 H 1.08995 * 109.46833 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.47201 * 300.00036 * 9 8 7 33 33 H 1.09000 * 109.47298 * 309.99932 * 10 8 7 34 34 H 1.08995 * 109.46998 * 70.00508 * 10 8 7 35 35 H 1.09000 * 109.47102 * 300.00043 * 11 10 8 36 36 H 1.09005 * 109.47416 * 59.99881 * 11 10 8 37 37 H 0.96998 * 120.00440 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 2.2367 -1.1221 -0.7646 6 6 1.3589 -2.1577 -1.4702 7 6 3.5495 -0.7781 -1.4711 8 7 4.0716 -1.9750 -2.1441 9 6 4.4591 -3.0014 -1.1672 10 6 5.1971 -1.6348 -3.0248 11 6 5.5514 -2.8458 -3.8903 12 6 6.7062 -2.4971 -4.7933 13 1 7.1441 -1.5107 -4.7537 14 6 7.2040 -3.4374 -5.6703 15 7 6.6713 -4.6389 -5.7183 16 14 8.6352 -3.0050 -6.7902 17 1 9.0505 -1.6009 -6.5430 18 1 9.7752 -3.9145 -6.5101 19 1 8.2180 -3.1561 -8.2074 20 1 -0.3634 0.8492 0.5787 21 1 -0.3633 0.0765 -1.0248 22 1 -0.3633 -0.9259 0.4461 23 1 3.1715 -0.8747 1.2687 24 1 1.6112 -1.8578 1.2694 25 1 0.7296 -2.6611 -0.7363 26 1 0.7297 -1.6590 -2.2073 27 1 1.9921 -2.8910 -1.9696 28 1 3.3709 0.0046 -2.2084 29 1 4.2757 -0.4276 -0.7378 30 1 3.5896 -3.2852 -0.5742 31 1 4.8426 -3.8762 -1.6922 32 1 5.2329 -2.6041 -0.5104 33 1 4.9168 -0.7993 -3.6663 34 1 6.0599 -1.3554 -2.4203 35 1 5.8316 -3.6813 -3.2488 36 1 4.6885 -3.1253 -4.4948 37 1 7.0217 -5.3005 -6.3350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704037818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -5.263474 kcal Electronic energy + Delta-G solvation = -14210.824895 eV Core-core repulsion = 11987.709639 eV Total energy + Delta-G solvation = -2223.115256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13484 -37.72148 -35.09137 -31.96414 -30.01894 -28.82504 -28.18513 -26.96424 -24.29670 -21.99176 -21.47710 -19.39087 -18.56879 -16.70133 -16.49918 -16.38117 -16.03971 -14.98108 -14.68442 -14.42100 -14.22817 -13.99359 -13.70460 -13.27638 -12.91014 -12.82806 -12.79106 -12.67530 -12.49271 -12.41012 -12.19123 -11.97543 -11.74584 -11.39405 -11.25210 -10.61294 -10.53042 -10.30002 -9.14934 -8.19690 -6.30975 1.40305 1.40762 1.54081 2.40470 2.80180 3.13632 3.14370 3.81666 3.96254 4.00533 4.20581 4.34230 4.44291 4.49187 4.58724 4.60222 4.75633 4.86308 4.93703 4.95188 4.99228 5.02945 5.08359 5.13427 5.18181 5.23884 5.30234 5.46879 5.47855 5.63328 5.69323 5.79642 6.11567 6.33132 6.35432 6.86427 7.38129 8.92722 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068861 B = 0.005433 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.516142 B = 5152.786486 C = 5219.536457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.126 4.126 6 C -0.104 4.104 7 C 0.093 3.907 8 N -0.545 5.545 9 C 0.034 3.966 10 C 0.078 3.922 11 C 0.037 3.963 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.018 0.982 35 H -0.005 1.005 36 H -0.008 1.008 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 8.029 11.966 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.161 4.161 3 H 0.121 0.879 4 C -0.206 4.206 5 C -0.126 4.126 6 C -0.161 4.161 7 C -0.035 4.035 8 N -0.268 5.268 9 C -0.114 4.114 10 C -0.049 4.049 11 C -0.001 4.001 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.088 0.912 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.205 7.680 11.595 17.250 hybrid contribution 1.539 0.145 -0.274 1.570 sum -8.666 7.825 11.321 16.263 Atomic orbital electron populations 1.21318 0.91751 1.02352 1.01968 1.22527 0.96096 0.94069 1.03370 0.87859 1.23349 1.02474 1.01751 0.93048 1.21480 0.96805 1.01100 0.93257 1.21180 0.97942 0.97485 0.99522 1.21614 0.93953 0.91618 0.96316 1.61957 1.33424 1.10852 1.20607 1.22315 0.99749 0.95233 0.94147 1.21983 0.90134 0.98573 0.94247 1.18919 0.94547 0.93073 0.93534 1.21661 1.16821 0.98795 1.21048 0.92306 1.25954 1.00019 0.94762 0.98855 1.70114 1.43259 1.05318 1.38480 0.85382 0.78581 0.78679 0.78276 1.18619 1.20313 1.20283 0.91169 0.92377 0.92259 0.89233 0.88050 0.92182 0.92973 0.92297 0.91231 0.95041 0.89903 0.93321 0.96151 0.92052 0.96424 0.98625 0.98940 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.22 71.98 0.66 -1.26 16 2 C -0.14 -2.82 6.13 -10.77 -0.07 -2.89 16 3 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.17 -3.49 9.43 30.60 0.29 -3.20 16 5 C -0.13 -3.12 1.59 -52.16 -0.08 -3.21 16 6 C -0.10 -2.70 8.28 71.98 0.60 -2.10 16 7 C 0.09 2.78 5.10 86.30 0.44 3.22 16 8 N -0.54 -20.27 3.52 -922.47 -3.25 -23.52 16 9 C 0.03 1.17 8.67 127.69 1.11 2.28 16 10 C 0.08 3.43 4.90 86.30 0.42 3.86 16 11 C 0.04 2.01 4.90 29.85 0.15 2.16 16 12 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 16 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.06 0.99 8.02 -2.39 -0.02 0.97 16 22 H 0.06 0.93 7.78 -2.38 -0.02 0.91 16 23 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 24 H 0.10 1.88 7.96 -2.39 -0.02 1.86 16 25 H 0.06 1.32 7.78 -2.38 -0.02 1.30 16 26 H 0.05 1.32 8.02 -2.39 -0.02 1.30 16 27 H 0.06 1.85 6.02 -2.39 -0.01 1.84 16 28 H 0.07 2.10 7.93 -2.39 -0.02 2.08 16 29 H 0.03 0.91 7.88 -2.39 -0.02 0.90 16 30 H 0.08 2.49 6.52 -2.38 -0.02 2.47 16 31 H 0.05 1.95 6.30 -2.39 -0.02 1.94 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 34 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.00 -0.27 6.47 -2.39 -0.02 -0.28 16 36 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -63.61 293.85 4.28 -59.34 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.00 Total: 6.78 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 4.21 Total: -32.08 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.96 Total: -80.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.61 4.28 -59.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704037818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.072 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds