Wall clock time and date at job start Mon Mar 30 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.56249 * 2 1 4 4 C 1.53001 * 117.49888 * 214.30937 * 2 1 3 5 5 C 1.52999 * 60.00077 * 252.50854 * 4 2 1 6 6 C 1.53006 * 117.49499 * 107.51190 * 5 4 2 7 7 N 1.46890 * 117.50133 * 252.50525 * 5 4 2 8 8 C 1.46901 * 111.00688 * 248.61128 * 7 5 4 9 9 C 1.52992 * 109.47859 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99711 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00219 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46794 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.47140 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.46982 * 330.00118 * 16 14 12 20 20 H 1.08998 * 109.46774 * 274.31137 * 1 2 3 21 21 H 1.09003 * 109.46684 * 34.31019 * 1 2 3 22 22 H 1.08995 * 109.47114 * 154.31199 * 1 2 3 23 23 H 1.09004 * 117.49786 * 145.01966 * 4 2 1 24 24 H 1.08995 * 117.49796 * 0.02562 * 4 2 1 25 25 H 1.09003 * 109.46684 * 231.25214 * 6 5 4 26 26 H 1.08999 * 109.47389 * 351.25096 * 6 5 4 27 27 H 1.08999 * 109.47267 * 111.25791 * 6 5 4 28 28 H 1.00905 * 111.00280 * 12.57113 * 7 5 4 29 29 H 1.09002 * 109.46980 * 59.99769 * 8 7 5 30 30 H 1.09001 * 109.46628 * 300.00190 * 8 7 5 31 31 H 1.09002 * 109.47103 * 59.99734 * 9 8 7 32 32 H 1.08998 * 109.46862 * 300.00546 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 34 34 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 37 37 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7650 6 6 1.3592 -2.1566 1.4715 7 7 3.4966 -0.7898 1.4433 8 6 4.0496 -1.9647 2.1301 9 6 5.3583 -1.5812 2.8236 10 6 5.9338 -2.8048 3.5394 11 6 7.2423 -2.4210 4.2334 12 6 7.8094 -3.6265 4.9380 13 1 7.2885 -4.5716 4.8953 14 6 8.9934 -3.5227 5.6370 15 7 9.4881 -4.5745 6.2522 16 14 9.8947 -1.8881 5.7101 17 1 9.4211 -1.1140 6.8855 18 1 11.3542 -2.1327 5.8339 19 1 9.6253 -1.1184 4.4691 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8489 -0.5793 22 1 -0.3633 -0.9261 -0.4454 23 1 3.1715 -0.8752 -1.2683 24 1 1.6112 -1.8582 -1.2686 25 1 0.7313 -1.6577 2.2098 26 1 0.7285 -2.6593 0.7383 27 1 1.9929 -2.8903 1.9697 28 1 4.1654 -0.4020 0.7947 29 1 4.2410 -2.7539 1.4030 30 1 3.3358 -2.3205 2.8731 31 1 5.1665 -0.7922 3.5507 32 1 6.0722 -1.2250 2.0809 33 1 6.1256 -3.5942 2.8125 34 1 5.2197 -3.1604 4.2821 35 1 7.9566 -2.0651 3.4910 36 1 7.0501 -1.6319 4.9603 37 1 10.3212 -4.5016 6.7437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704273624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:46 Heat of formation + Delta-G solvation = -2.002327 kcal Electronic energy + Delta-G solvation = -13663.856554 eV Core-core repulsion = 11440.882712 eV Total energy + Delta-G solvation = -2222.973842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15444 -35.68066 -33.43012 -31.79109 -29.16767 -28.49756 -27.61321 -24.29748 -21.63020 -20.91168 -20.08406 -18.97022 -16.69845 -16.22057 -15.60594 -14.76417 -14.18308 -13.91371 -13.58866 -13.44895 -12.85138 -12.72306 -12.57127 -12.39132 -11.97356 -11.80472 -11.56676 -11.44648 -11.20298 -10.77288 -10.62026 -10.33098 -9.99775 -9.83578 -9.65255 -9.42920 -9.12070 -8.50015 -8.17631 -6.00778 -3.98266 3.33944 3.40819 3.45476 3.54785 4.03762 4.48957 4.54885 4.68110 4.71608 5.12172 5.31359 5.33584 5.36082 5.48072 5.51202 5.57054 5.60498 5.65939 5.72540 5.83319 5.86823 6.00722 6.06346 6.10921 6.22302 6.39592 6.68721 6.78973 6.93814 7.12466 7.34649 7.37611 7.50332 7.84541 8.58601 9.04557 9.62316 11.12879 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.072171 B = 0.004508 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.875599 B = 6209.856699 C = 6411.397674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.215 4.215 5 C 0.060 3.940 6 C -0.121 4.121 7 N -0.654 5.654 8 C 0.057 3.943 9 C -0.120 4.120 10 C -0.101 4.101 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.341 0.659 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 8.239 -12.705 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.164 4.164 3 H 0.121 0.879 4 C -0.254 4.254 5 C -0.033 4.033 6 C -0.178 4.178 7 N -0.283 5.283 8 C -0.071 4.071 9 C -0.158 4.158 10 C -0.139 4.139 11 C -0.052 4.052 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.086 8.415 -12.003 21.763 hybrid contribution 1.008 0.345 -0.725 1.289 sum -15.078 8.760 -12.728 21.589 Atomic orbital electron populations 1.21311 0.92793 1.01598 1.01866 1.22527 0.95205 0.94828 1.03866 0.87880 1.23861 1.02892 1.02404 0.96280 1.21692 0.93510 0.98514 0.89562 1.21477 0.98788 0.97220 1.00318 1.60287 1.04694 1.30823 1.32487 1.22149 0.96916 0.90738 0.97293 1.21691 0.94587 0.99926 0.99548 1.21411 0.98395 0.95535 0.98546 1.19573 0.92971 0.97196 0.95425 1.21196 1.07007 0.96592 1.30970 0.91126 1.25054 0.97195 0.96420 0.94994 1.69924 1.20873 1.29408 1.34323 0.86754 0.78751 0.84638 0.78999 1.20292 1.21458 1.19027 0.92044 0.92387 0.92661 0.89156 0.88913 0.91580 0.92107 0.91014 0.84026 0.95135 0.90481 0.91637 0.92798 0.93019 0.92803 0.96783 0.97061 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.22 37.16 0.34 -0.61 16 2 C -0.15 -1.41 6.34 -90.62 -0.57 -1.99 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.21 -2.10 9.52 -26.73 -0.25 -2.35 16 5 C 0.06 0.66 2.92 -131.60 -0.38 0.28 16 6 C -0.12 -1.23 8.50 37.16 0.32 -0.91 16 7 N -0.65 -8.29 6.78 -99.97 -0.68 -8.97 16 8 C 0.06 0.80 4.70 -3.83 -0.02 0.78 16 9 C -0.12 -1.95 5.47 -26.74 -0.15 -2.10 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 12 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 16 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 H 0.06 0.49 8.03 -51.93 -0.42 0.08 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.41 7.77 -51.93 -0.40 0.01 16 23 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 25 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 26 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 27 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 28 H 0.34 4.05 8.52 -39.29 -0.33 3.72 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.07 6.35 -51.93 -0.33 0.74 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 296.12 15.07 4.46 4.46 Total: -1.00 -30.76 296.12 -8.25 -39.01 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.74 Total: -1.08 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -1.40 Total: -23.26 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.10 Total: -36.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.76 -8.25 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704273624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.009 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds