Wall clock time and date at job start Mon Mar 30 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.56249 * 2 1 4 4 C 1.53001 * 117.49888 * 214.30937 * 2 1 3 5 5 C 1.52999 * 60.00077 * 252.50854 * 4 2 1 6 6 C 1.53006 * 117.49499 * 107.51190 * 5 4 2 7 7 N 1.46890 * 117.50133 * 252.50525 * 5 4 2 8 8 C 1.46901 * 111.00688 * 248.61128 * 7 5 4 9 9 C 1.52992 * 109.47859 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99711 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00219 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46794 * 90.00022 * 16 14 12 18 18 H 1.48502 * 109.47140 * 210.00005 * 16 14 12 19 19 H 1.48501 * 109.46982 * 330.00118 * 16 14 12 20 20 H 1.08998 * 109.46774 * 274.31137 * 1 2 3 21 21 H 1.09003 * 109.46684 * 34.31019 * 1 2 3 22 22 H 1.08995 * 109.47114 * 154.31199 * 1 2 3 23 23 H 1.09004 * 117.49786 * 145.01966 * 4 2 1 24 24 H 1.08995 * 117.49796 * 0.02562 * 4 2 1 25 25 H 1.09003 * 109.46684 * 231.25214 * 6 5 4 26 26 H 1.08999 * 109.47389 * 351.25096 * 6 5 4 27 27 H 1.08999 * 109.47267 * 111.25791 * 6 5 4 28 28 H 1.00905 * 111.00280 * 12.57113 * 7 5 4 29 29 H 1.09002 * 109.46980 * 59.99769 * 8 7 5 30 30 H 1.09001 * 109.46628 * 300.00190 * 8 7 5 31 31 H 1.09002 * 109.47103 * 59.99734 * 9 8 7 32 32 H 1.08998 * 109.46862 * 300.00546 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 34 34 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 37 37 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7650 6 6 1.3592 -2.1566 1.4715 7 7 3.4966 -0.7898 1.4433 8 6 4.0496 -1.9647 2.1301 9 6 5.3583 -1.5812 2.8236 10 6 5.9338 -2.8048 3.5394 11 6 7.2423 -2.4210 4.2334 12 6 7.8094 -3.6265 4.9380 13 1 7.2885 -4.5716 4.8953 14 6 8.9934 -3.5227 5.6370 15 7 9.4881 -4.5745 6.2522 16 14 9.8947 -1.8881 5.7101 17 1 9.4211 -1.1140 6.8855 18 1 11.3542 -2.1327 5.8339 19 1 9.6253 -1.1184 4.4691 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8489 -0.5793 22 1 -0.3633 -0.9261 -0.4454 23 1 3.1715 -0.8752 -1.2683 24 1 1.6112 -1.8582 -1.2686 25 1 0.7313 -1.6577 2.2098 26 1 0.7285 -2.6593 0.7383 27 1 1.9929 -2.8903 1.9697 28 1 4.1654 -0.4020 0.7947 29 1 4.2410 -2.7539 1.4030 30 1 3.3358 -2.3205 2.8731 31 1 5.1665 -0.7922 3.5507 32 1 6.0722 -1.2250 2.0809 33 1 6.1256 -3.5942 2.8125 34 1 5.2197 -3.1604 4.2821 35 1 7.9566 -2.0651 3.4910 36 1 7.0501 -1.6319 4.9603 37 1 10.3212 -4.5016 6.7437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704273624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:46 Heat of formation + Delta-G solvation = -21.185612 kcal Electronic energy + Delta-G solvation = -13664.688404 eV Core-core repulsion = 11440.882712 eV Total energy + Delta-G solvation = -2223.805692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98963 -37.07270 -35.15604 -33.56012 -30.45279 -29.41733 -28.64508 -25.95721 -22.94669 -21.86389 -21.78266 -19.82777 -18.86072 -17.20235 -16.68649 -16.34799 -15.91699 -14.88886 -14.80649 -14.51002 -14.32030 -14.01416 -13.63366 -13.55148 -13.18148 -13.06208 -12.84207 -12.61949 -12.40517 -12.22600 -11.98752 -11.76321 -11.47367 -11.33228 -11.26660 -11.18279 -10.76472 -10.65827 -9.09490 -8.29857 -6.33991 1.36070 1.37765 1.50365 2.36527 2.73648 3.05487 3.14540 3.78157 3.87836 3.96067 4.12355 4.22936 4.38248 4.46447 4.60173 4.63395 4.74469 4.82473 4.87148 4.88377 4.90334 4.98898 5.04539 5.13350 5.16507 5.20829 5.24456 5.28768 5.44625 5.57315 5.64528 5.68339 6.11883 6.29161 6.42193 6.74294 7.30863 8.87187 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.072171 B = 0.004508 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.875599 B = 6209.856699 C = 6411.397674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 H 0.100 0.900 4 C -0.209 4.209 5 C 0.040 3.960 6 C -0.120 4.120 7 N -0.660 5.660 8 C 0.068 3.932 9 C -0.108 4.108 10 C -0.094 4.094 11 C -0.013 4.013 12 C -0.535 4.535 13 H 0.030 0.970 14 C 0.000 4.000 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.247 1.247 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.345 0.655 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 10.256 -13.888 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.160 4.160 3 H 0.118 0.882 4 C -0.248 4.248 5 C -0.052 4.052 6 C -0.177 4.177 7 N -0.289 5.289 8 C -0.061 4.061 9 C -0.146 4.146 10 C -0.133 4.133 11 C -0.050 4.050 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.170 1.170 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.796 10.437 -13.203 23.777 hybrid contribution 1.177 -0.373 -0.363 1.287 sum -15.619 10.064 -13.566 23.006 Atomic orbital electron populations 1.21326 0.91508 1.02479 1.02119 1.22606 0.96201 0.94365 1.02812 0.88219 1.23891 1.03124 1.02516 0.95263 1.21830 0.93113 0.99857 0.90402 1.21479 0.98706 0.96889 1.00650 1.60252 1.05365 1.30122 1.33192 1.21932 0.95637 0.91256 0.97258 1.21509 0.95823 0.97771 0.99451 1.21283 0.96446 0.97203 0.98337 1.19546 0.94874 0.95146 0.95446 1.21574 1.07198 0.96933 1.31636 0.95171 1.26085 0.98240 1.00824 0.94441 1.70078 1.21688 1.32166 1.35492 0.85596 0.77245 0.79369 0.80058 1.19096 1.20857 1.17008 0.92130 0.91329 0.91974 0.89057 0.87990 0.91557 0.90661 0.92040 0.83613 0.95156 0.90635 0.91737 0.92075 0.93491 0.93371 0.96303 0.96432 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.22 71.98 0.66 -0.94 16 2 C -0.14 -2.44 6.34 -10.79 -0.07 -2.51 16 3 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.21 -3.61 9.52 30.59 0.29 -3.32 16 5 C 0.04 0.81 2.92 3.53 0.01 0.82 16 6 C -0.12 -2.25 8.50 71.98 0.61 -1.64 16 7 N -0.66 -15.58 6.78 -470.20 -3.19 -18.77 16 8 C 0.07 1.79 4.70 86.30 0.41 2.20 16 9 C -0.11 -3.34 5.47 30.59 0.17 -3.17 16 10 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 11 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 12 C -0.54 -31.91 9.66 25.60 0.25 -31.67 16 13 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 14 C 0.00 0.03 5.47 84.66 0.46 0.49 16 15 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 16 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 20 H 0.06 0.85 8.03 -2.39 -0.02 0.83 16 21 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.06 0.77 7.77 -2.39 -0.02 0.75 16 23 H 0.09 1.56 8.09 -2.38 -0.02 1.54 16 24 H 0.10 1.57 7.96 -2.39 -0.02 1.55 16 25 H 0.07 1.22 8.03 -2.39 -0.02 1.20 16 26 H 0.07 1.16 7.77 -2.39 -0.02 1.14 16 27 H 0.06 1.27 5.61 -2.39 -0.01 1.26 16 28 H 0.34 7.54 8.52 -89.69 -0.76 6.77 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 2.02 6.35 -2.39 -0.02 2.01 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 36 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -65.88 296.12 2.26 -63.62 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.19 Total: 12.69 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.07 Total: -43.82 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.89 Total: -79.65 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -65.88 2.26 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704273624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.436 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds