Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 115.56260 * 2 1 4 4 C 1.53004 * 117.50246 * 145.69264 * 2 1 3 5 5 C 1.53005 * 60.00116 * 107.48828 * 4 2 1 6 6 C 1.53005 * 117.49713 * 107.51086 * 5 4 2 7 7 N 1.46892 * 117.50089 * 252.51225 * 5 4 2 8 8 C 1.46898 * 111.00019 * 248.60997 * 7 5 4 9 9 C 1.53004 * 109.47178 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47038 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 H 1.09005 * 109.46965 * 205.68750 * 1 2 3 21 21 H 1.09001 * 109.47591 * 325.68533 * 1 2 3 22 22 H 1.08997 * 109.47594 * 85.68748 * 1 2 3 23 23 H 1.08995 * 117.49425 * 359.97438 * 4 2 1 24 24 H 1.08997 * 117.51435 * 214.97253 * 4 2 1 25 25 H 1.08995 * 109.46901 * 231.25609 * 6 5 4 26 26 H 1.08993 * 109.47050 * 351.25634 * 6 5 4 27 27 H 1.09002 * 109.46474 * 111.25528 * 6 5 4 28 28 H 1.00905 * 111.00239 * 124.65335 * 7 5 4 29 29 H 1.08996 * 109.47442 * 59.99876 * 8 7 5 30 30 H 1.09004 * 109.46841 * 299.99615 * 8 7 5 31 31 H 1.08996 * 109.47142 * 59.99561 * 9 8 7 32 32 H 1.09004 * 109.46812 * 299.99501 * 9 8 7 33 33 H 1.08996 * 109.47435 * 59.99869 * 10 9 8 34 34 H 1.08996 * 109.47029 * 299.99747 * 10 9 8 35 35 H 1.09003 * 109.46825 * 60.00325 * 11 10 9 36 36 H 1.08996 * 109.47396 * 299.99898 * 11 10 9 37 37 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7651 6 6 3.5491 -0.7763 -1.4716 7 7 1.3938 -2.1148 -1.4434 8 6 2.2152 -3.1205 -2.1302 9 6 1.3044 -4.1357 -2.8238 10 6 2.1600 -5.1828 -3.5397 11 6 1.2492 -6.1982 -4.2327 12 6 2.0918 -7.2300 -4.9373 13 1 3.1693 -7.1675 -4.8954 14 6 1.4874 -8.2532 -5.6364 15 7 0.1754 -8.3291 -5.6879 16 14 2.5319 -9.5325 -6.5091 17 1 2.8095 -9.0821 -7.8968 18 1 1.8031 -10.8259 -6.5450 19 1 3.8136 -9.7067 -5.7796 20 1 -0.3633 -0.9261 0.4455 21 1 -0.3634 0.8488 0.5793 22 1 -0.3634 0.0773 -1.0247 23 1 1.6113 -1.8583 1.2685 24 1 3.1716 -0.8755 1.2682 25 1 3.3700 0.0054 -2.2098 26 1 4.2747 -0.4243 -0.7384 27 1 3.9376 -1.6646 -1.9698 28 1 0.7552 -1.6697 -2.0855 29 1 2.8446 -3.6338 -1.4032 30 1 2.8441 -2.6301 -2.8733 31 1 0.6754 -3.6221 -3.5509 32 1 0.6752 -4.6261 -2.0811 33 1 2.7893 -5.6964 -2.8129 34 1 2.7889 -4.6920 -4.2824 35 1 0.6196 -5.6849 -4.9595 36 1 0.6205 -6.6889 -3.4898 37 1 -0.3668 -7.6650 -5.2344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704273628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = -28.289891 kcal Electronic energy + Delta-G solvation = -13713.237944 eV Core-core repulsion = 11489.124187 eV Total energy + Delta-G solvation = -2224.113756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91013 -37.20470 -35.41929 -33.29138 -30.63661 -29.21329 -27.93626 -25.95510 -23.45555 -22.11473 -21.70777 -20.08816 -18.88631 -16.86234 -16.49148 -16.19784 -15.67520 -15.53796 -15.07021 -14.54915 -14.10655 -13.99178 -13.73988 -13.38585 -13.22820 -12.97645 -12.68270 -12.53153 -12.32003 -12.26513 -12.16259 -11.94100 -11.57194 -11.51318 -11.03227 -10.65964 -10.55541 -10.46907 -9.35084 -8.70789 -6.41111 1.51394 1.61320 1.79253 2.56141 2.77189 3.01031 3.14542 3.75126 3.93157 3.99944 4.05515 4.21369 4.34027 4.46106 4.48673 4.55545 4.73920 4.74888 4.78820 4.87699 4.94951 4.96989 5.03331 5.06361 5.09277 5.16385 5.22485 5.23142 5.45992 5.48870 5.55009 5.99754 6.11125 6.17848 6.40352 6.56568 7.41806 8.70052 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068078 B = 0.004452 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.196471 B = 6287.102245 C = 6540.257870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 H 0.117 0.883 4 C -0.163 4.163 5 C 0.020 3.980 6 C -0.144 4.144 7 N -0.658 5.658 8 C 0.074 3.926 9 C -0.106 4.106 10 C -0.090 4.090 11 C 0.006 3.994 12 C -0.622 4.622 13 H 0.051 0.949 14 C -0.042 4.042 15 N -0.939 5.939 16 Si 1.122 2.878 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.268 1.268 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.343 0.657 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.051 0.949 35 H -0.013 1.013 36 H -0.014 1.014 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 17.376 10.480 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.155 4.155 3 H 0.135 0.865 4 C -0.200 4.200 5 C -0.072 4.072 6 C -0.203 4.203 7 N -0.289 5.289 8 C -0.055 4.055 9 C -0.144 4.144 10 C -0.128 4.128 11 C -0.031 4.031 12 C -0.660 4.660 13 H 0.069 0.931 14 C -0.239 4.239 15 N -0.576 5.576 16 Si 0.943 3.057 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.104 0.896 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.902 15.642 10.124 19.267 hybrid contribution 0.002 1.657 0.164 1.665 sum 4.904 17.299 10.288 20.716 Atomic orbital electron populations 1.21228 0.92358 1.01967 1.01815 1.22645 0.95929 0.94024 1.02884 0.86491 1.23351 1.02618 1.00999 0.93076 1.21711 0.95148 0.96715 0.93615 1.21828 0.95585 1.01828 1.01037 1.60295 1.18953 1.14768 1.34853 1.21863 0.94909 0.92512 0.96235 1.21480 0.98114 0.96192 0.98583 1.21277 0.97724 0.95649 0.98166 1.19207 0.95336 0.94431 0.94131 1.22579 0.94644 1.13227 1.35525 0.93100 1.27538 0.97874 1.01610 0.96852 1.70889 1.05692 1.37455 1.43594 0.82884 0.73651 0.73350 0.75841 1.19606 1.20698 1.19315 0.93131 0.91133 0.92500 0.89556 0.87768 0.91807 0.90671 0.92137 0.83779 0.91569 0.94100 0.92705 0.92777 0.93239 0.93041 0.99427 0.99588 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.49 71.98 0.68 -1.29 16 2 C -0.14 -2.36 6.13 -10.79 -0.07 -2.43 16 3 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.16 -3.14 9.75 30.60 0.30 -2.84 16 5 C 0.02 0.41 2.77 3.54 0.01 0.42 16 6 C -0.14 -2.70 9.48 71.98 0.68 -2.01 16 7 N -0.66 -16.45 6.17 -470.16 -2.90 -19.35 16 8 C 0.07 2.08 4.70 86.31 0.41 2.49 16 9 C -0.11 -3.68 5.47 30.59 0.17 -3.51 16 10 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 11 C 0.01 0.33 4.28 29.85 0.13 0.46 16 12 C -0.62 -36.99 9.11 25.60 0.23 -36.76 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 14 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 15 N -0.94 -60.12 13.65 21.45 0.29 -59.82 16 16 Si 1.12 51.43 29.90 68.60 2.05 53.49 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 20 H 0.05 0.99 7.90 -2.38 -0.02 0.98 16 21 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 0.96 7.93 -2.39 -0.02 0.94 16 23 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 24 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 27 H 0.06 1.27 5.61 -2.39 -0.01 1.25 16 28 H 0.34 8.13 8.38 -89.69 -0.75 7.38 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.10 6.35 -2.38 -0.02 1.09 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 36 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 37 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 Total: -1.00 -66.23 299.13 2.96 -63.27 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.36 Total: 13.62 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 3.16 Total: -51.20 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.61 Total: -79.18 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.49 kcal Total: -66.23 2.96 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704273628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.976 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds