Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46789 * 2 1 4 4 C 1.53000 * 109.47053 * 239.99625 * 2 1 3 5 5 C 1.50690 * 109.47226 * 174.99998 * 4 2 1 6 6 H 1.08003 * 120.00030 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00459 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00494 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 60.00286 * 9 7 5 11 11 H 1.48507 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47372 * 300.00272 * 9 7 5 13 13 N 1.46903 * 109.46736 * 119.99803 * 2 1 3 14 14 C 1.46892 * 110.99841 * 274.99397 * 13 2 1 15 15 C 1.53004 * 109.46860 * 180.02562 * 14 13 2 16 16 C 1.52997 * 115.54907 * 34.42418 * 15 14 13 17 17 C 1.53002 * 117.49810 * 248.74810 * 15 14 13 18 18 C 1.53000 * 59.99990 * 252.48862 * 17 15 14 19 19 H 1.09001 * 117.49994 * 252.50856 * 18 17 15 20 20 C 1.53002 * 117.49455 * 107.49364 * 18 17 15 21 21 H 1.08999 * 109.47086 * 60.00076 * 1 2 3 22 22 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47118 * 300.00112 * 1 2 3 24 24 H 1.08999 * 109.46945 * 295.00369 * 4 2 1 25 25 H 1.09008 * 109.46842 * 54.99778 * 4 2 1 26 26 H 0.96998 * 120.00778 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99627 * 151.04728 * 13 2 1 28 28 H 1.09009 * 109.47037 * 60.00745 * 14 13 2 29 29 H 1.08992 * 109.47767 * 300.00629 * 14 13 2 30 30 H 1.09002 * 109.47153 * 325.71729 * 16 15 14 31 31 H 1.09001 * 109.46832 * 205.71920 * 16 15 14 32 32 H 1.09004 * 109.47261 * 85.71902 * 16 15 14 33 33 H 1.08999 * 117.50085 * 359.97438 * 17 15 14 34 34 H 1.09005 * 117.49215 * 144.97622 * 17 15 14 35 35 H 1.08995 * 109.47592 * 351.37460 * 20 18 17 36 36 H 1.08996 * 109.47547 * 111.37649 * 20 18 17 37 37 H 1.09003 * 109.47110 * 231.37771 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3582 8 7 3.5763 -1.8363 -3.3004 9 14 6.0920 -1.0604 -2.4374 10 1 6.6845 -1.6865 -1.2282 11 1 6.5870 -1.7606 -3.6498 12 1 6.4844 0.3705 -2.4966 13 7 2.0197 -0.6925 1.1995 14 6 2.0825 0.2227 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 3.6340 -1.6211 3.2925 17 6 1.6095 -0.7765 4.7178 18 6 2.7314 0.2509 4.8812 19 1 3.5597 -0.0088 5.5405 20 6 2.3426 1.7306 4.8612 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.7516 -1.7716 -1.2055 25 1 1.6053 -0.2618 -2.1370 26 1 4.0605 -2.2424 -4.0362 27 1 2.9173 -1.1205 1.0288 28 1 1.0871 0.6164 2.5525 29 1 2.7589 1.0462 2.1182 30 1 3.4154 -2.0924 2.3342 31 1 3.5978 -2.3710 4.0828 32 1 4.6283 -1.1754 3.2598 33 1 0.5945 -0.3982 4.5961 34 1 1.6995 -1.7124 5.2693 35 1 1.2956 1.8273 4.5743 36 1 2.4886 2.1581 5.8531 37 1 2.9668 2.2606 4.1417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704280394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 0.616913 kcal Electronic energy + Delta-G solvation = -14414.334496 eV Core-core repulsion = 12191.474233 eV Total energy + Delta-G solvation = -2222.860263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.76477 -36.04417 -32.68345 -30.81226 -29.18148 -27.38804 -26.77330 -24.84164 -22.80874 -20.95497 -19.38268 -18.21440 -16.33062 -15.32647 -15.26098 -14.45476 -14.26196 -13.90788 -13.08910 -12.90558 -12.77352 -12.22004 -12.08943 -11.86374 -11.77564 -11.50958 -11.27914 -11.20202 -11.04600 -10.69407 -10.52064 -10.48649 -10.18823 -9.69270 -9.30329 -9.15111 -9.02779 -8.38190 -7.55466 -6.01555 -4.04777 3.31267 3.36316 3.38215 3.88459 4.43838 4.76616 4.84916 4.98972 5.24456 5.36150 5.40583 5.44633 5.73124 5.82729 5.92461 5.95222 5.99756 6.03163 6.08651 6.14923 6.26675 6.29808 6.34288 6.36616 6.45771 6.59015 6.68022 6.97263 6.99295 7.57016 7.65771 7.98508 8.12130 8.33114 8.40402 9.01329 9.59274 11.09310 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030914 B = 0.008001 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.529741 B = 3498.532512 C = 4014.686712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.098 3.902 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.167 4.167 18 C -0.158 4.158 19 H 0.099 0.901 20 C -0.120 4.120 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.355 0.645 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 3.583 13.512 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.318 5.318 14 C -0.032 4.032 15 C -0.110 4.110 16 C -0.178 4.178 17 C -0.204 4.204 18 C -0.177 4.177 19 H 0.117 0.883 20 C -0.177 4.177 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.179 0.821 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.880 3.228 13.486 14.163 hybrid contribution 1.820 0.589 -0.306 1.937 sum -1.060 3.817 13.180 13.763 Atomic orbital electron populations 1.21791 0.96830 1.01280 0.99334 1.21612 0.93314 0.95843 0.91550 0.95462 1.19274 0.95355 0.96199 0.90849 1.21141 0.92267 1.34559 1.08316 0.93106 1.24981 0.98190 0.95188 0.95693 1.69947 1.35583 1.35576 1.11880 0.86712 0.85967 0.78166 0.77481 1.20173 1.21251 1.20372 1.60661 1.34908 1.32029 1.04165 1.21375 0.98773 0.93221 0.89781 1.21566 1.00032 0.99738 0.89672 1.21372 0.96856 0.96662 1.02936 1.23203 0.94872 0.99905 1.02385 1.22449 1.01084 0.93389 1.00784 0.88327 1.21313 1.01242 0.93890 1.01300 0.93412 0.92655 0.94630 0.95598 0.96082 0.92893 0.82149 0.91893 0.95700 0.90094 0.92989 0.92743 0.89123 0.89332 0.92596 0.92693 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.42 37.16 0.35 -2.14 16 2 C 0.09 1.83 2.59 -67.71 -0.18 1.66 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 5 C -0.52 -14.52 8.12 -34.45 -0.28 -14.80 16 6 H 0.05 1.37 7.49 -52.48 -0.39 0.98 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -13.44 5.93 -106.72 -0.63 -14.07 16 14 C 0.10 1.64 4.69 -3.83 -0.02 1.62 16 15 C -0.11 -1.60 2.57 -154.51 -0.40 -2.00 16 16 C -0.12 -1.78 9.53 37.16 0.35 -1.43 16 17 C -0.17 -2.12 9.47 -26.73 -0.25 -2.37 16 18 C -0.16 -1.95 6.13 -90.62 -0.56 -2.51 16 19 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.12 -1.34 9.22 37.16 0.34 -1.00 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.36 7.53 5.02 -39.29 -0.20 7.34 16 28 H 0.06 1.01 7.07 -51.92 -0.37 0.65 16 29 H 0.02 0.44 7.94 -51.93 -0.41 0.02 16 30 H 0.08 1.35 5.83 -51.93 -0.30 1.05 16 31 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 34 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.05 0.62 7.77 -51.93 -0.40 0.21 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -28.62 295.43 -7.94 -36.56 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.62 Total: 3.36 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.86 Total: -20.92 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.10 Total: -39.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.62 -7.94 -36.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704280394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.177 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds