Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46789 * 2 1 4 4 C 1.53000 * 109.47053 * 239.99625 * 2 1 3 5 5 C 1.50690 * 109.47226 * 174.99998 * 4 2 1 6 6 H 1.08003 * 120.00030 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00459 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00494 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 60.00286 * 9 7 5 11 11 H 1.48507 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47372 * 300.00272 * 9 7 5 13 13 N 1.46903 * 109.46736 * 119.99803 * 2 1 3 14 14 C 1.46892 * 110.99841 * 274.99397 * 13 2 1 15 15 C 1.53004 * 109.46860 * 180.02562 * 14 13 2 16 16 C 1.52997 * 115.54907 * 34.42418 * 15 14 13 17 17 C 1.53002 * 117.49810 * 248.74810 * 15 14 13 18 18 C 1.53000 * 59.99990 * 252.48862 * 17 15 14 19 19 H 1.09001 * 117.49994 * 252.50856 * 18 17 15 20 20 C 1.53002 * 117.49455 * 107.49364 * 18 17 15 21 21 H 1.08999 * 109.47086 * 60.00076 * 1 2 3 22 22 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47118 * 300.00112 * 1 2 3 24 24 H 1.08999 * 109.46945 * 295.00369 * 4 2 1 25 25 H 1.09008 * 109.46842 * 54.99778 * 4 2 1 26 26 H 0.96998 * 120.00778 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99627 * 151.04728 * 13 2 1 28 28 H 1.09009 * 109.47037 * 60.00745 * 14 13 2 29 29 H 1.08992 * 109.47767 * 300.00629 * 14 13 2 30 30 H 1.09002 * 109.47153 * 325.71729 * 16 15 14 31 31 H 1.09001 * 109.46832 * 205.71920 * 16 15 14 32 32 H 1.09004 * 109.47261 * 85.71902 * 16 15 14 33 33 H 1.08999 * 117.50085 * 359.97438 * 17 15 14 34 34 H 1.09005 * 117.49215 * 144.97622 * 17 15 14 35 35 H 1.08995 * 109.47592 * 351.37460 * 20 18 17 36 36 H 1.08996 * 109.47547 * 111.37649 * 20 18 17 37 37 H 1.09003 * 109.47110 * 231.37771 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3582 8 7 3.5763 -1.8363 -3.3004 9 14 6.0920 -1.0604 -2.4374 10 1 6.6845 -1.6865 -1.2282 11 1 6.5870 -1.7606 -3.6498 12 1 6.4844 0.3705 -2.4966 13 7 2.0197 -0.6925 1.1995 14 6 2.0825 0.2227 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 3.6340 -1.6211 3.2925 17 6 1.6095 -0.7765 4.7178 18 6 2.7314 0.2509 4.8812 19 1 3.5597 -0.0088 5.5405 20 6 2.3426 1.7306 4.8612 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.7516 -1.7716 -1.2055 25 1 1.6053 -0.2618 -2.1370 26 1 4.0605 -2.2424 -4.0362 27 1 2.9173 -1.1205 1.0288 28 1 1.0871 0.6164 2.5525 29 1 2.7589 1.0462 2.1182 30 1 3.4154 -2.0924 2.3342 31 1 3.5978 -2.3710 4.0828 32 1 4.6283 -1.1754 3.2598 33 1 0.5945 -0.3982 4.5961 34 1 1.6995 -1.7124 5.2693 35 1 1.2956 1.8273 4.5743 36 1 2.4886 2.1581 5.8531 37 1 2.9668 2.2606 4.1417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704280394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = -15.671369 kcal Electronic energy + Delta-G solvation = -14415.040809 eV Core-core repulsion = 12191.474233 eV Total energy + Delta-G solvation = -2223.566576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92380 -37.66598 -34.74990 -32.29427 -30.40338 -29.27907 -27.81702 -26.33287 -24.78937 -21.93680 -21.10925 -19.39023 -18.51515 -16.91209 -16.53412 -16.27277 -15.64459 -15.25496 -14.55785 -14.32135 -13.88897 -13.60837 -13.56328 -13.34434 -13.16983 -13.06851 -12.87070 -12.56924 -12.51834 -12.40040 -12.22388 -12.08233 -11.71278 -11.29848 -11.03573 -10.63863 -10.58111 -10.32539 -9.13298 -8.19864 -6.30818 1.38853 1.40902 1.48769 2.39583 2.83443 3.11972 3.48195 3.80341 3.91441 4.07408 4.21114 4.35018 4.47358 4.56619 4.65319 4.70446 4.78322 4.89459 4.94502 4.99368 5.00931 5.06271 5.08109 5.17622 5.21850 5.27878 5.33843 5.41885 5.48281 5.53913 5.56706 5.83448 6.20409 6.44846 6.67311 6.83938 7.37913 8.91581 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030914 B = 0.008001 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.529741 B = 3498.532512 C = 4014.686712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.021 0.979 4 C 0.028 3.972 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.103 3.897 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.159 4.159 18 C -0.143 4.143 19 H 0.111 0.889 20 C -0.121 4.121 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.060 0.940 24 H -0.003 1.003 25 H -0.005 1.005 26 H 0.263 0.737 27 H 0.345 0.655 28 H 0.071 0.929 29 H 0.015 0.985 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 4.271 15.465 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.039 0.961 4 C -0.010 4.010 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.318 5.318 14 C -0.026 4.026 15 C -0.136 4.136 16 C -0.175 4.175 17 C -0.195 4.195 18 C -0.161 4.161 19 H 0.129 0.871 20 C -0.179 4.179 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.345 3.929 15.460 16.123 hybrid contribution 1.612 0.376 -0.899 1.884 sum -0.732 4.305 14.561 15.202 Atomic orbital electron populations 1.21700 0.94490 1.01406 1.00832 1.21444 0.95174 0.94690 0.90357 0.96084 1.19132 0.94863 0.94723 0.92249 1.21469 0.93272 1.34325 1.08378 0.92698 1.25883 1.03374 0.94735 0.95269 1.70082 1.37650 1.36587 1.12605 0.85596 0.79748 0.78473 0.77823 1.19002 1.20882 1.19559 1.60716 1.34218 1.32595 1.04273 1.21381 0.99121 0.92623 0.89498 1.21506 1.01504 1.00836 0.89743 1.21318 0.96969 0.97112 1.02144 1.23274 0.94891 1.00636 1.00738 1.22552 1.01146 0.93893 0.98556 0.87103 1.21347 1.01076 0.93106 1.02324 0.92885 0.93196 0.92144 0.98430 0.98647 0.92770 0.83377 0.91070 0.96697 0.92663 0.91277 0.92802 0.88800 0.88211 0.92568 0.90707 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 2 C 0.09 3.99 2.59 44.92 0.12 4.11 16 3 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 4 C 0.03 1.48 4.57 29.84 0.14 1.62 16 5 C -0.54 -30.21 8.12 25.60 0.21 -30.00 16 6 H 0.05 2.98 7.49 -2.91 -0.02 2.96 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.68 -26.95 5.93 -491.56 -2.91 -29.87 16 14 C 0.10 3.33 4.69 86.31 0.40 3.74 16 15 C -0.14 -3.72 2.57 -52.18 -0.13 -3.86 16 16 C -0.12 -3.36 9.53 71.98 0.69 -2.67 16 17 C -0.16 -3.60 9.47 30.59 0.29 -3.31 16 18 C -0.14 -3.12 6.13 -10.79 -0.07 -3.18 16 19 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.12 -2.38 9.22 71.98 0.66 -1.72 16 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 27 H 0.34 14.87 5.02 -89.69 -0.45 14.42 16 28 H 0.07 2.16 7.07 -2.38 -0.02 2.14 16 29 H 0.01 0.51 7.94 -2.39 -0.02 0.49 16 30 H 0.05 1.85 5.83 -2.39 -0.01 1.83 16 31 H 0.07 1.67 7.90 -2.39 -0.02 1.65 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 2.08 7.96 -2.39 -0.02 2.06 16 34 H 0.10 2.05 8.05 -2.38 -0.02 2.03 16 35 H 0.06 1.09 7.77 -2.39 -0.02 1.07 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.10 8.03 -2.39 -0.02 1.08 16 Total: -1.00 -61.36 295.43 3.40 -57.96 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.56 Total: 20.38 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.44 Total: -38.40 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.63 Total: -86.15 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -61.36 3.40 -57.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704280394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.288 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds