Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46867 * 2 1 4 4 C 1.52999 * 109.46942 * 239.99796 * 2 1 3 5 5 C 1.50700 * 109.47034 * 174.99804 * 4 2 1 6 6 H 1.08011 * 119.99963 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00373 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99937 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00350 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46711 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47120 * 120.00198 * 9 7 5 12 12 H 1.48501 * 109.46986 * 240.00284 * 9 7 5 13 13 N 1.46898 * 109.46844 * 119.99938 * 2 1 3 14 14 C 1.46897 * 111.00361 * 274.99705 * 13 2 1 15 15 C 1.52997 * 109.47242 * 180.02562 * 14 13 2 16 16 C 1.52997 * 115.55348 * 325.58817 * 15 14 13 17 17 C 1.53002 * 117.49626 * 111.25847 * 15 14 13 18 18 C 1.53003 * 117.49616 * 179.91466 * 15 14 13 19 19 H 1.09000 * 117.50011 * 145.00540 * 18 15 14 20 20 C 1.52998 * 117.49913 * 359.97438 * 18 15 14 21 21 H 1.08999 * 109.47514 * 299.99928 * 1 2 3 22 22 H 1.08996 * 109.47161 * 60.00036 * 1 2 3 23 23 H 1.09006 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47385 * 295.00155 * 4 2 1 25 25 H 1.08999 * 109.47159 * 55.00548 * 4 2 1 26 26 H 0.96997 * 120.00429 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99680 * 151.04773 * 13 2 1 28 28 H 1.09007 * 109.46619 * 60.00414 * 14 13 2 29 29 H 1.08995 * 109.47196 * 300.00704 * 14 13 2 30 30 H 1.09002 * 109.47153 * 34.41373 * 16 15 14 31 31 H 1.09001 * 109.46832 * 274.41564 * 16 15 14 32 32 H 1.09004 * 109.47261 * 154.41545 * 16 15 14 33 33 H 1.09003 * 117.49882 * 215.00500 * 17 15 14 34 34 H 1.09006 * 117.49946 * 359.97438 * 17 15 14 35 35 H 1.08992 * 109.47381 * 59.99855 * 20 18 15 36 36 H 1.09001 * 109.46746 * 180.02562 * 20 18 15 37 37 H 1.08999 * 109.47377 * 299.99733 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3583 8 7 3.5763 -1.8361 -3.3005 9 14 6.0921 -1.0614 -2.4366 10 1 6.5838 -0.2929 -1.2650 11 1 6.6854 -2.4225 -2.4197 12 1 6.4870 -0.3648 -3.6872 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5962 -0.5330 3.5742 16 6 2.1687 -1.9986 3.6736 17 6 3.9851 -0.1649 4.1000 18 6 2.7357 0.2524 4.8798 19 1 2.5231 -0.2752 5.8097 20 6 2.3515 1.7331 4.8581 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7516 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 4.0606 -2.2423 -4.0363 27 1 2.9173 -1.1205 1.0287 28 1 1.0870 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 2.1125 -2.4293 2.6738 31 1 1.1909 -2.0603 4.1513 32 1 2.8982 -2.5505 4.2664 33 1 4.5943 -0.9671 4.5167 34 1 4.5330 0.6151 3.5713 35 1 1.3043 1.8326 4.5727 36 1 2.5007 2.1618 5.8491 37 1 2.9762 2.2601 4.1369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704280398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -17.585947 kcal Electronic energy + Delta-G solvation = -14407.164851 eV Core-core repulsion = 12183.515252 eV Total energy + Delta-G solvation = -2223.649599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.89807 -37.66196 -34.74411 -32.21096 -30.40428 -29.27422 -27.80248 -26.29244 -24.77731 -21.95687 -21.10079 -19.43511 -18.52133 -16.82346 -16.45867 -16.33155 -15.49636 -15.25284 -14.65412 -14.32766 -13.80908 -13.60406 -13.52390 -13.41264 -13.16346 -12.93125 -12.86967 -12.63063 -12.56366 -12.36620 -12.26316 -12.02510 -11.80271 -11.24522 -11.02464 -10.67342 -10.57593 -10.28290 -9.14376 -8.20257 -6.30616 1.37724 1.38678 1.50625 2.39202 2.81671 3.11491 3.43681 3.81560 3.93070 4.08440 4.26721 4.31676 4.46750 4.55912 4.70574 4.73662 4.76302 4.91520 4.94191 4.97092 5.00999 5.09561 5.13638 5.21631 5.22124 5.29844 5.34947 5.46626 5.49542 5.56164 5.62707 5.84234 6.20717 6.45247 6.66429 6.84613 7.38145 8.91625 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.008195 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.051691 B = 3416.087703 C = 3940.627152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 H 0.020 0.980 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.677 5.677 14 C 0.103 3.897 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.181 4.181 18 C -0.133 4.133 19 H 0.116 0.884 20 C -0.122 4.122 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.050 0.950 24 H -0.002 1.002 25 H -0.005 1.005 26 H 0.263 0.737 27 H 0.342 0.658 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 4.249 15.361 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.015 4.015 3 H 0.038 0.962 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.309 5.309 14 C -0.026 4.026 15 C -0.132 4.132 16 C -0.162 4.162 17 C -0.218 4.218 18 C -0.152 4.152 19 H 0.134 0.866 20 C -0.179 4.179 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.407 3.917 15.364 16.037 hybrid contribution 1.721 0.425 -0.915 1.995 sum -0.686 4.342 14.449 15.103 Atomic orbital electron populations 1.21696 0.94439 1.01460 1.00826 1.21429 0.95162 0.94626 0.90319 0.96191 1.19136 0.94803 0.94784 0.92252 1.21529 0.93310 1.34032 1.08207 0.92736 1.25876 1.03298 0.94817 0.95337 1.70096 1.37455 1.36780 1.12679 0.85479 0.79898 0.77989 0.78151 1.18886 1.20368 1.20576 1.60624 1.33709 1.32395 1.04180 1.21377 0.99451 0.92503 0.89276 1.21605 1.00117 0.96957 0.94554 1.21186 1.00596 0.92170 1.02276 1.23355 0.90712 1.03554 1.04215 1.22529 1.00876 0.96777 0.95009 0.86585 1.21357 1.01317 0.92892 1.02357 0.92115 0.92951 0.93106 0.98322 0.98692 0.92802 0.83910 0.90982 0.96837 0.92106 0.92179 0.92480 0.88236 0.89954 0.92051 0.90672 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.41 71.98 0.68 -3.85 16 2 C 0.09 4.00 2.59 44.92 0.12 4.12 16 3 H 0.02 0.87 7.80 -2.39 -0.02 0.86 16 4 C 0.03 1.46 4.57 29.85 0.14 1.60 16 5 C -0.53 -29.94 8.12 25.60 0.21 -29.73 16 6 H 0.05 2.97 7.49 -2.91 -0.02 2.95 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -56.57 13.29 21.44 0.28 -56.29 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -26.21 4.83 -491.59 -2.38 -28.59 16 14 C 0.10 3.30 4.65 86.30 0.40 3.70 16 15 C -0.13 -3.60 2.50 -52.18 -0.13 -3.73 16 16 C -0.11 -2.82 9.73 71.98 0.70 -2.12 16 17 C -0.18 -4.55 9.47 30.62 0.29 -4.26 16 18 C -0.13 -2.92 6.13 -10.77 -0.07 -2.98 16 19 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 20 C -0.12 -2.40 9.21 71.98 0.66 -1.74 16 21 H 0.06 1.87 7.45 -2.39 -0.02 1.85 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.34 14.73 7.09 -89.69 -0.64 14.10 16 28 H 0.07 2.18 7.32 -2.38 -0.02 2.16 16 29 H 0.01 0.46 7.68 -2.39 -0.02 0.44 16 30 H 0.06 1.93 6.70 -2.39 -0.02 1.92 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.35 7.90 -2.38 -0.02 1.33 16 33 H 0.10 2.29 8.05 -2.39 -0.02 2.27 16 34 H 0.08 2.19 7.96 -2.38 -0.02 2.18 16 35 H 0.06 1.19 8.02 -2.39 -0.02 1.17 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.01 7.77 -2.39 -0.02 0.99 16 Total: -1.00 -60.90 297.37 3.77 -57.13 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.37 Total: 19.57 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 3.46 Total: -38.25 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.09 Total: -84.87 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.90 3.77 -57.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704280398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.546 kcal (2) G-P(sol) polarization free energy of solvation -60.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds