Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47342 * 2 1 4 4 C 1.53004 * 109.46655 * 240.00746 * 2 1 3 5 5 C 1.50709 * 109.46773 * 174.99863 * 4 2 1 6 6 H 1.07999 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99405 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00693 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99381 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47459 * 90.00115 * 9 7 5 11 11 H 1.48505 * 109.46499 * 209.99731 * 9 7 5 12 12 H 1.48500 * 109.46977 * 329.99387 * 9 7 5 13 13 N 1.46898 * 109.47389 * 120.00513 * 2 1 3 14 14 C 1.46892 * 110.99980 * 274.99750 * 13 2 1 15 15 C 1.53003 * 109.47008 * 180.02562 * 14 13 2 16 16 C 1.53006 * 115.55002 * 325.58146 * 15 14 13 17 17 C 1.53001 * 117.51964 * 111.28498 * 15 14 13 18 18 C 1.53000 * 117.49925 * 179.91803 * 15 14 13 19 19 H 1.08998 * 117.49694 * 359.96975 * 18 15 14 20 20 C 1.53002 * 117.49989 * 144.97430 * 18 15 14 21 21 H 1.09002 * 109.46587 * 299.99603 * 1 2 3 22 22 H 1.08994 * 109.47073 * 59.98848 * 1 2 3 23 23 H 1.08994 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47447 * 294.99434 * 4 2 1 25 25 H 1.09000 * 109.47055 * 55.00118 * 4 2 1 26 26 H 0.96993 * 120.00471 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99644 * 151.03978 * 13 2 1 28 28 H 1.09000 * 109.47064 * 60.00359 * 14 13 2 29 29 H 1.08996 * 109.47433 * 299.99577 * 14 13 2 30 30 H 1.09001 * 109.46801 * 274.33246 * 16 15 14 31 31 H 1.09001 * 109.46998 * 34.32842 * 16 15 14 32 32 H 1.09000 * 109.47050 * 154.33133 * 16 15 14 33 33 H 1.08996 * 117.49555 * 214.96648 * 17 15 14 34 34 H 1.08995 * 117.49577 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.47297 * 59.99796 * 20 18 15 36 36 H 1.09002 * 109.47021 * 179.97438 * 20 18 15 37 37 H 1.08999 * 109.46645 * 299.99316 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0854 -0.5398 7 6 4.2302 -1.1924 -2.3587 8 7 3.5762 -1.8365 -3.3004 9 14 6.0920 -1.0611 -2.4370 10 1 6.6999 -2.2145 -1.7262 11 1 6.5293 -1.0680 -3.8562 12 1 6.5267 0.2035 -1.7912 13 7 2.0197 -0.6926 1.1993 14 6 2.0826 0.2224 2.3468 15 6 2.5965 -0.5332 3.5740 16 6 2.1689 -1.9990 3.6733 17 6 3.9851 -0.1651 4.1006 18 6 2.7360 0.2519 4.8797 19 1 2.4622 1.3068 4.8644 20 6 2.4369 -0.4886 6.1848 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7516 -1.7714 -1.2059 25 1 1.6053 -0.2615 -2.1370 26 1 4.0605 -2.2432 -4.0359 27 1 2.9173 -1.1206 1.0285 28 1 1.0872 0.6160 2.5525 29 1 2.7590 1.0459 2.1182 30 1 1.1918 -2.0607 4.1525 31 1 2.1110 -2.4291 2.6734 32 1 2.8992 -2.5512 4.2648 33 1 4.5939 -0.9672 4.5178 34 1 4.5330 0.6152 3.5725 35 1 3.1144 -1.3367 6.2848 36 1 2.5766 0.1889 7.0272 37 1 1.4072 -0.8456 6.1721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704280402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -1.752294 kcal Electronic energy + Delta-G solvation = -14331.210176 eV Core-core repulsion = 12108.247177 eV Total energy + Delta-G solvation = -2222.963000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.71536 -36.09253 -32.70541 -30.80674 -28.43715 -27.67318 -27.35857 -24.61690 -22.79954 -20.80318 -19.38525 -18.29346 -16.33143 -15.66979 -14.73836 -14.52494 -14.41156 -13.45229 -13.40276 -13.06237 -12.76682 -12.09306 -12.04697 -11.78806 -11.73193 -11.55491 -11.26380 -11.18599 -11.05281 -10.76173 -10.55626 -10.48769 -10.20533 -9.64439 -9.33970 -9.10263 -9.02380 -8.38194 -7.57570 -6.01378 -4.04263 3.30432 3.37085 3.39657 3.87812 4.44290 4.66593 4.94461 5.01993 5.24496 5.35382 5.41892 5.46051 5.77867 5.78853 5.91468 5.94897 6.01775 6.03153 6.05880 6.18082 6.27775 6.31063 6.36109 6.39089 6.47745 6.59338 6.79603 6.97212 6.98777 7.56813 7.66182 7.98647 8.11052 8.33104 8.40448 9.01897 9.59832 11.09544 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030161 B = 0.007846 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.113376 B = 3567.897715 C = 4187.753162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.096 3.904 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.176 4.176 18 C -0.156 4.156 19 H 0.098 0.902 20 C -0.117 4.117 21 H 0.035 0.965 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.355 0.645 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 2.600 14.019 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.034 4.034 15 C -0.112 4.112 16 C -0.165 4.165 17 C -0.213 4.213 18 C -0.175 4.175 19 H 0.116 0.884 20 C -0.174 4.174 21 H 0.054 0.946 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.176 0.824 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.894 2.250 14.001 14.473 hybrid contribution 1.917 0.721 -0.374 2.082 sum -0.977 2.971 13.628 13.982 Atomic orbital electron populations 1.21785 0.96787 1.01282 0.99374 1.21613 0.93316 0.95840 0.91536 0.95486 1.19280 0.95374 0.96196 0.90827 1.21175 0.92253 1.34420 1.08231 0.93066 1.24980 0.98173 0.95231 0.95695 1.69955 1.35454 1.35658 1.11959 0.86649 0.86069 0.78404 0.77199 1.20595 1.21238 1.20054 1.60569 1.34632 1.31851 1.04114 1.21413 0.99104 0.93140 0.89709 1.21649 0.98856 0.96807 0.93882 1.21224 0.99652 0.92288 1.03346 1.23288 0.90725 1.03284 1.03989 1.22397 1.02995 0.99338 0.92780 0.88429 1.21287 1.01490 0.99508 0.95092 0.94564 0.93433 0.92653 0.95581 0.96117 0.92969 0.82403 0.91756 0.95945 0.93016 0.89727 0.93768 0.89090 0.89204 0.92683 0.92773 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.42 37.16 0.35 -2.11 16 2 C 0.09 1.82 2.59 -67.71 -0.18 1.64 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.45 8.12 -34.44 -0.28 -14.73 16 6 H 0.05 1.39 7.49 -52.49 -0.39 0.99 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.12 4.83 -106.73 -0.52 -13.64 16 14 C 0.10 1.59 5.62 -3.83 -0.02 1.57 16 15 C -0.11 -1.61 2.50 -154.50 -0.39 -2.00 16 16 C -0.11 -1.52 8.76 37.16 0.33 -1.20 16 17 C -0.18 -2.36 9.47 -26.73 -0.25 -2.62 16 18 C -0.16 -1.93 6.13 -90.61 -0.56 -2.48 16 19 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 20 C -0.12 -1.21 9.21 37.16 0.34 -0.87 16 21 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.35 7.53 7.10 -39.29 -0.28 7.25 16 28 H 0.06 1.03 7.44 -51.93 -0.39 0.65 16 29 H 0.02 0.39 7.81 -51.93 -0.41 -0.02 16 30 H 0.05 0.68 8.02 -51.93 -0.42 0.27 16 31 H 0.08 1.36 6.70 -51.93 -0.35 1.01 16 32 H 0.04 0.56 7.77 -51.93 -0.40 0.16 16 33 H 0.09 1.15 7.96 -51.93 -0.41 0.74 16 34 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 35 H 0.05 0.56 7.78 -51.93 -0.40 0.16 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.59 8.02 -51.93 -0.42 0.18 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -28.42 297.36 -7.94 -36.36 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.75 Total: 2.87 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.88 Total: -20.75 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.22 Total: -39.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.42 -7.94 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704280402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.608 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds