Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47342 * 2 1 4 4 C 1.53004 * 109.46655 * 240.00746 * 2 1 3 5 5 C 1.50709 * 109.46773 * 174.99863 * 4 2 1 6 6 H 1.07999 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99405 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00693 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99381 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47459 * 90.00115 * 9 7 5 11 11 H 1.48505 * 109.46499 * 209.99731 * 9 7 5 12 12 H 1.48500 * 109.46977 * 329.99387 * 9 7 5 13 13 N 1.46898 * 109.47389 * 120.00513 * 2 1 3 14 14 C 1.46892 * 110.99980 * 274.99750 * 13 2 1 15 15 C 1.53003 * 109.47008 * 180.02562 * 14 13 2 16 16 C 1.53006 * 115.55002 * 325.58146 * 15 14 13 17 17 C 1.53001 * 117.51964 * 111.28498 * 15 14 13 18 18 C 1.53000 * 117.49925 * 179.91803 * 15 14 13 19 19 H 1.08998 * 117.49694 * 359.96975 * 18 15 14 20 20 C 1.53002 * 117.49989 * 144.97430 * 18 15 14 21 21 H 1.09002 * 109.46587 * 299.99603 * 1 2 3 22 22 H 1.08994 * 109.47073 * 59.98848 * 1 2 3 23 23 H 1.08994 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47447 * 294.99434 * 4 2 1 25 25 H 1.09000 * 109.47055 * 55.00118 * 4 2 1 26 26 H 0.96993 * 120.00471 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99644 * 151.03978 * 13 2 1 28 28 H 1.09000 * 109.47064 * 60.00359 * 14 13 2 29 29 H 1.08996 * 109.47433 * 299.99577 * 14 13 2 30 30 H 1.09001 * 109.46801 * 274.33246 * 16 15 14 31 31 H 1.09001 * 109.46998 * 34.32842 * 16 15 14 32 32 H 1.09000 * 109.47050 * 154.33133 * 16 15 14 33 33 H 1.08996 * 117.49555 * 214.96648 * 17 15 14 34 34 H 1.08995 * 117.49577 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.47297 * 59.99796 * 20 18 15 36 36 H 1.09002 * 109.47021 * 179.97438 * 20 18 15 37 37 H 1.08999 * 109.46645 * 299.99316 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0854 -0.5398 7 6 4.2302 -1.1924 -2.3587 8 7 3.5762 -1.8365 -3.3004 9 14 6.0920 -1.0611 -2.4370 10 1 6.6999 -2.2145 -1.7262 11 1 6.5293 -1.0680 -3.8562 12 1 6.5267 0.2035 -1.7912 13 7 2.0197 -0.6926 1.1993 14 6 2.0826 0.2224 2.3468 15 6 2.5965 -0.5332 3.5740 16 6 2.1689 -1.9990 3.6733 17 6 3.9851 -0.1651 4.1006 18 6 2.7360 0.2519 4.8797 19 1 2.4622 1.3068 4.8644 20 6 2.4369 -0.4886 6.1848 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7516 -1.7714 -1.2059 25 1 1.6053 -0.2615 -2.1370 26 1 4.0605 -2.2432 -4.0359 27 1 2.9173 -1.1206 1.0285 28 1 1.0872 0.6160 2.5525 29 1 2.7590 1.0459 2.1182 30 1 1.1918 -2.0607 4.1525 31 1 2.1110 -2.4291 2.6734 32 1 2.8992 -2.5512 4.2648 33 1 4.5939 -0.9672 4.5178 34 1 4.5330 0.6152 3.5725 35 1 3.1144 -1.3367 6.2848 36 1 2.5766 0.1889 7.0272 37 1 1.4072 -0.8456 6.1721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704280402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -17.435778 kcal Electronic energy + Delta-G solvation = -14331.890263 eV Core-core repulsion = 12108.247177 eV Total energy + Delta-G solvation = -2223.643087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87092 -37.71188 -34.76565 -32.32305 -29.63913 -29.23544 -28.69425 -26.08889 -24.74343 -21.85007 -21.08721 -19.42858 -18.51608 -17.07381 -16.40792 -16.24873 -15.75264 -14.83420 -14.60780 -14.41976 -14.04165 -13.59735 -13.46679 -13.29733 -13.13190 -13.03305 -12.73800 -12.61144 -12.52229 -12.38012 -12.25834 -11.99847 -11.83497 -11.27492 -11.03327 -10.65612 -10.56761 -10.29093 -9.15181 -8.19834 -6.30256 1.38678 1.39241 1.49576 2.39450 2.81861 3.11697 3.40674 3.86151 3.97725 4.05459 4.25992 4.30920 4.47643 4.54611 4.70616 4.75146 4.75943 4.92991 4.94729 4.97253 5.02382 5.10212 5.17842 5.21700 5.22220 5.30286 5.35180 5.46211 5.49751 5.55875 5.65847 5.84239 6.20799 6.44544 6.66181 6.84626 7.38387 8.91806 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030161 B = 0.007846 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.113376 B = 3567.897715 C = 4187.753162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.020 0.980 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.099 3.901 15 C -0.130 4.130 16 C -0.102 4.102 17 C -0.181 4.181 18 C -0.137 4.137 19 H 0.103 0.897 20 C -0.116 4.116 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.050 0.950 24 H -0.002 1.002 25 H -0.005 1.005 26 H 0.263 0.737 27 H 0.342 0.658 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 3.176 15.938 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.038 0.962 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.308 5.308 14 C -0.030 4.030 15 C -0.131 4.131 16 C -0.159 4.159 17 C -0.218 4.218 18 C -0.155 4.155 19 H 0.121 0.879 20 C -0.173 4.173 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.345 2.837 15.940 16.359 hybrid contribution 1.713 0.553 -0.963 2.041 sum -0.632 3.390 14.978 15.369 Atomic orbital electron populations 1.21692 0.94424 1.01458 1.00818 1.21444 0.95187 0.94651 0.90351 0.96176 1.19134 0.94805 0.94780 0.92222 1.21493 0.93289 1.34129 1.08238 0.92755 1.25870 1.03277 0.94824 0.95307 1.70085 1.37511 1.36669 1.12692 0.85536 0.79920 0.78785 0.77322 1.19716 1.20866 1.19194 1.60621 1.33726 1.32304 1.04111 1.21441 0.99508 0.92613 0.89467 1.21593 1.00078 0.97101 0.94282 1.21142 1.00572 0.92097 1.02109 1.23340 0.90707 1.03449 1.04285 1.22500 1.01068 0.99503 0.92456 0.87871 1.21318 1.01799 0.99778 0.94371 0.92117 0.92970 0.93098 0.98312 0.98714 0.92801 0.83869 0.90958 0.96796 0.92155 0.92232 0.92548 0.88256 0.89918 0.92429 0.91118 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.42 71.98 0.68 -3.85 16 2 C 0.09 3.96 2.59 44.92 0.12 4.08 16 3 H 0.02 0.88 7.80 -2.38 -0.02 0.86 16 4 C 0.03 1.48 4.57 29.85 0.14 1.62 16 5 C -0.53 -29.95 8.12 25.60 0.21 -29.75 16 6 H 0.05 2.95 7.49 -2.91 -0.02 2.93 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.68 -26.13 4.83 -491.58 -2.37 -28.51 16 14 C 0.10 3.18 5.62 86.31 0.49 3.66 16 15 C -0.13 -3.55 2.50 -52.18 -0.13 -3.68 16 16 C -0.10 -2.73 8.76 71.98 0.63 -2.10 16 17 C -0.18 -4.53 9.47 30.60 0.29 -4.24 16 18 C -0.14 -3.01 6.13 -10.79 -0.07 -3.07 16 19 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 20 C -0.12 -2.02 9.21 71.98 0.66 -1.36 16 21 H 0.06 1.87 7.45 -2.39 -0.02 1.86 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.34 14.72 7.10 -89.69 -0.64 14.08 16 28 H 0.07 2.19 7.44 -2.39 -0.02 2.17 16 29 H 0.01 0.47 7.81 -2.39 -0.02 0.45 16 30 H 0.06 1.48 8.02 -2.39 -0.02 1.46 16 31 H 0.06 1.89 6.70 -2.39 -0.02 1.88 16 32 H 0.06 1.34 7.77 -2.39 -0.02 1.32 16 33 H 0.10 2.30 7.96 -2.39 -0.02 2.28 16 34 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 35 H 0.06 0.99 7.78 -2.39 -0.02 0.97 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.07 8.02 -2.39 -0.02 1.05 16 Total: -1.00 -60.75 297.36 3.78 -56.97 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.37 Total: 19.30 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.47 Total: -37.92 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.09 Total: -84.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.75 3.78 -56.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704280402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.536 kcal (2) G-P(sol) polarization free energy of solvation -60.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds