Wall clock time and date at job start Mon Mar 30 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 113.25636 * 2 1 4 4 C 1.53507 * 114.34721 * 226.87397 * 2 1 3 5 5 N 1.47478 * 87.93808 * 220.31516 * 4 2 1 6 6 C 1.46893 * 111.00222 * 138.70032 * 5 4 2 7 7 C 1.52997 * 109.47217 * 74.03418 * 6 5 4 8 8 C 1.52995 * 109.47596 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47600 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47460 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 C 1.47484 * 87.83347 * 27.00900 * 5 4 2 19 19 H 1.09006 * 113.47653 * 87.75613 * 18 5 4 20 20 C 1.52994 * 113.47672 * 218.16478 * 18 5 4 21 21 H 1.08998 * 109.46875 * 287.04578 * 1 2 3 22 22 H 1.08998 * 109.47055 * 47.04907 * 1 2 3 23 23 H 1.09004 * 109.46871 * 167.05130 * 1 2 3 24 24 H 1.08999 * 113.47676 * 105.54613 * 4 2 1 25 25 H 1.09001 * 113.47836 * 335.08578 * 4 2 1 26 26 H 1.08997 * 109.47527 * 314.03443 * 6 5 4 27 27 H 1.08999 * 109.47583 * 194.03153 * 6 5 4 28 28 H 1.09002 * 109.47542 * 59.99569 * 7 6 5 29 29 H 1.09006 * 109.46910 * 299.99720 * 7 6 5 30 30 H 1.09003 * 109.47604 * 59.99424 * 8 7 6 31 31 H 1.08999 * 109.47292 * 299.99789 * 8 7 6 32 32 H 1.09005 * 109.46800 * 60.00280 * 9 8 7 33 33 H 1.08998 * 109.47382 * 300.00079 * 9 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47537 * 40.49878 * 20 18 5 36 36 H 1.09004 * 109.47169 * 160.49822 * 20 18 5 37 37 H 1.09003 * 109.47296 * 280.49330 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1629 -0.9561 -1.0207 5 7 3.1648 -1.3022 0.0045 6 6 3.4392 -2.7453 0.0064 7 6 4.2883 -3.1046 -1.2146 8 6 4.5736 -4.6077 -1.2130 9 6 5.4222 -4.9671 -2.4344 10 6 5.7037 -6.4475 -2.4325 11 1 5.3165 -7.0699 -1.6393 12 6 6.4565 -7.0075 -3.4429 13 7 6.9284 -6.2496 -4.4085 14 14 6.8061 -8.8425 -3.4402 15 1 7.6295 -9.1912 -4.6256 16 1 7.5416 -9.2044 -2.2021 17 1 5.5242 -9.5905 -3.4910 18 6 2.1586 -0.9543 1.0251 19 1 1.5104 -1.7872 1.2976 20 6 2.7478 -0.2402 2.2433 21 1 -0.3633 0.3012 0.9825 22 1 -0.3633 0.7002 -0.7522 23 1 -0.3633 -1.0016 -0.2303 24 1 2.5860 -0.4480 -1.8873 25 1 1.5158 -1.7894 -1.2944 26 1 2.4983 -3.2942 -0.0312 27 1 3.9789 -3.0114 0.9152 28 1 5.2293 -2.5558 -1.1771 29 1 3.7485 -2.8386 -2.1235 30 1 3.6325 -5.1563 -1.2508 31 1 5.1132 -4.8742 -0.3042 32 1 6.3634 -4.4186 -2.3969 33 1 4.8823 -4.7007 -3.3430 34 1 7.4583 -6.6434 -5.1192 35 1 3.5013 0.4758 1.9155 36 1 1.9546 0.2850 2.7754 37 1 3.2071 -0.9729 2.9070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706785624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:37 Heat of formation + Delta-G solvation = 0.654228 kcal Electronic energy + Delta-G solvation = -13839.054394 eV Core-core repulsion = 11616.195749 eV Total energy + Delta-G solvation = -2222.858645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41178 -35.04731 -32.86848 -31.27126 -30.30357 -28.44689 -25.80590 -23.72799 -22.62170 -20.86825 -19.99976 -19.52628 -16.18087 -15.56218 -15.36780 -14.92589 -14.55117 -14.39741 -13.50636 -13.21663 -12.79397 -12.59816 -12.26647 -12.02360 -11.85605 -11.68574 -11.39449 -11.20731 -10.91122 -10.73790 -10.47765 -10.41003 -10.36182 -10.07839 -9.59141 -9.21255 -8.96859 -8.79248 -8.29968 -5.95156 -3.97454 3.35794 3.39867 3.42516 4.02253 4.27142 4.49626 4.63136 5.12052 5.19950 5.23000 5.24923 5.34533 5.40171 5.51649 5.55885 5.58407 5.66403 5.79002 5.83043 5.88578 5.93701 6.04688 6.14236 6.26088 6.34012 6.42350 6.64758 6.86140 7.00786 7.14739 7.29077 7.73559 7.89990 8.05974 8.48788 9.09807 9.66144 11.16213 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066761 B = 0.004610 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.307273 B = 6072.699124 C = 6190.019296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 H 0.099 0.901 4 C 0.002 3.998 5 N -0.469 5.469 6 C 0.022 3.978 7 C -0.111 4.111 8 C -0.109 4.109 9 C 0.021 3.979 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.287 1.287 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.023 3.977 19 H 0.073 0.927 20 C -0.133 4.133 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.534 11.991 9.868 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.117 0.883 4 C -0.127 4.127 5 N -0.191 5.191 6 C -0.106 4.106 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.213 1.213 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.086 4.086 19 H 0.091 0.909 20 C -0.191 4.191 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.734 12.256 9.709 18.966 hybrid contribution -0.446 -1.650 -0.117 1.713 sum -11.180 10.607 9.592 18.152 Atomic orbital electron populations 1.21705 0.94551 1.01916 1.01755 1.22830 0.95258 0.99027 0.96605 0.88269 1.23819 0.93889 0.98264 0.96679 1.68946 1.28949 1.17640 1.03596 1.22749 0.99361 0.87887 1.00605 1.21576 0.99382 0.98212 0.95721 1.21601 0.99910 0.92341 1.00869 1.19084 0.94544 0.96023 0.91920 1.21255 1.32336 0.93698 1.08619 0.92846 1.25033 0.95930 0.97923 0.95613 1.69964 1.35898 1.35294 1.12423 0.86666 0.78271 0.85720 0.77386 1.21285 1.20257 1.20295 1.23472 0.93492 0.97662 0.93959 0.90862 1.21611 1.00754 1.00313 0.96409 0.92397 0.92338 0.92658 0.89859 0.91335 0.94540 0.90962 0.91782 0.92743 0.93754 0.93490 0.96622 0.96754 0.93002 0.91743 0.92433 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.79 37.16 0.36 -0.80 16 2 C -0.12 -1.19 4.22 -90.09 -0.38 -1.57 16 3 H 0.10 0.97 8.12 -51.93 -0.42 0.55 16 4 C 0.00 0.03 6.58 -7.55 -0.05 -0.02 16 5 N -0.47 -6.52 6.20 -236.48 -1.47 -7.99 16 6 C 0.02 0.34 4.82 -3.83 -0.02 0.32 16 7 C -0.11 -2.03 5.32 -26.73 -0.14 -2.17 16 8 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 14 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.02 0.26 3.30 -71.44 -0.24 0.03 16 19 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 20 C -0.13 -1.33 9.93 37.15 0.37 -0.96 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.47 7.91 -51.93 -0.41 0.06 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 26 H 0.04 0.54 7.56 -51.93 -0.39 0.15 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -30.62 299.26 -9.05 -39.67 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -7.03 Total: -5.12 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.78 Total: -21.24 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.73 Total: -34.91 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.62 -9.05 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.323 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds