Wall clock time and date at job start Mon Mar 30 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 113.25636 * 2 1 4 4 C 1.53507 * 114.34721 * 226.87397 * 2 1 3 5 5 N 1.47478 * 87.93808 * 220.31516 * 4 2 1 6 6 C 1.46893 * 111.00222 * 138.70032 * 5 4 2 7 7 C 1.52997 * 109.47217 * 74.03418 * 6 5 4 8 8 C 1.52995 * 109.47596 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47600 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47460 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 C 1.47484 * 87.83347 * 27.00900 * 5 4 2 19 19 H 1.09006 * 113.47653 * 87.75613 * 18 5 4 20 20 C 1.52994 * 113.47672 * 218.16478 * 18 5 4 21 21 H 1.08998 * 109.46875 * 287.04578 * 1 2 3 22 22 H 1.08998 * 109.47055 * 47.04907 * 1 2 3 23 23 H 1.09004 * 109.46871 * 167.05130 * 1 2 3 24 24 H 1.08999 * 113.47676 * 105.54613 * 4 2 1 25 25 H 1.09001 * 113.47836 * 335.08578 * 4 2 1 26 26 H 1.08997 * 109.47527 * 314.03443 * 6 5 4 27 27 H 1.08999 * 109.47583 * 194.03153 * 6 5 4 28 28 H 1.09002 * 109.47542 * 59.99569 * 7 6 5 29 29 H 1.09006 * 109.46910 * 299.99720 * 7 6 5 30 30 H 1.09003 * 109.47604 * 59.99424 * 8 7 6 31 31 H 1.08999 * 109.47292 * 299.99789 * 8 7 6 32 32 H 1.09005 * 109.46800 * 60.00280 * 9 8 7 33 33 H 1.08998 * 109.47382 * 300.00079 * 9 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47537 * 40.49878 * 20 18 5 36 36 H 1.09004 * 109.47169 * 160.49822 * 20 18 5 37 37 H 1.09003 * 109.47296 * 280.49330 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1629 -0.9561 -1.0207 5 7 3.1648 -1.3022 0.0045 6 6 3.4392 -2.7453 0.0064 7 6 4.2883 -3.1046 -1.2146 8 6 4.5736 -4.6077 -1.2130 9 6 5.4222 -4.9671 -2.4344 10 6 5.7037 -6.4475 -2.4325 11 1 5.3165 -7.0699 -1.6393 12 6 6.4565 -7.0075 -3.4429 13 7 6.9284 -6.2496 -4.4085 14 14 6.8061 -8.8425 -3.4402 15 1 7.6295 -9.1912 -4.6256 16 1 7.5416 -9.2044 -2.2021 17 1 5.5242 -9.5905 -3.4910 18 6 2.1586 -0.9543 1.0251 19 1 1.5104 -1.7872 1.2976 20 6 2.7478 -0.2402 2.2433 21 1 -0.3633 0.3012 0.9825 22 1 -0.3633 0.7002 -0.7522 23 1 -0.3633 -1.0016 -0.2303 24 1 2.5860 -0.4480 -1.8873 25 1 1.5158 -1.7894 -1.2944 26 1 2.4983 -3.2942 -0.0312 27 1 3.9789 -3.0114 0.9152 28 1 5.2293 -2.5558 -1.1771 29 1 3.7485 -2.8386 -2.1235 30 1 3.6325 -5.1563 -1.2508 31 1 5.1132 -4.8742 -0.3042 32 1 6.3634 -4.4186 -2.3969 33 1 4.8823 -4.7007 -3.3430 34 1 7.4583 -6.6434 -5.1192 35 1 3.5013 0.4758 1.9155 36 1 1.9546 0.2850 2.7754 37 1 3.2071 -0.9729 2.9070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706785624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:37 Heat of formation + Delta-G solvation = -18.533177 kcal Electronic energy + Delta-G solvation = -13839.886422 eV Core-core repulsion = 11616.195749 eV Total energy + Delta-G solvation = -2223.690674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37594 -36.76784 -34.76361 -32.68817 -31.15999 -29.95417 -27.30992 -25.25059 -23.71258 -22.29963 -21.69271 -20.43792 -18.43963 -16.71394 -16.63329 -16.33706 -15.89039 -15.74914 -14.64833 -14.43417 -14.32172 -13.77971 -13.61273 -13.33929 -13.25954 -12.84635 -12.61117 -12.55878 -12.44799 -12.35331 -12.04572 -11.96002 -11.59622 -11.42378 -11.32406 -10.97648 -10.87415 -10.56614 -9.82733 -8.20998 -6.33190 1.38703 1.42513 1.50574 2.40147 3.03537 3.11499 3.42069 3.77376 3.94771 4.08658 4.31616 4.37044 4.45456 4.50735 4.54827 4.56574 4.65150 4.78397 4.83028 4.86035 4.90998 4.98657 5.05253 5.15117 5.20416 5.25938 5.30707 5.34487 5.46013 5.51731 5.54673 5.73977 5.84046 6.18411 6.23594 6.83778 7.36259 8.90889 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066761 B = 0.004610 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.307273 B = 6072.699124 C = 6190.019296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.490 5.490 6 C 0.033 3.967 7 C -0.100 4.100 8 C -0.096 4.096 9 C 0.023 3.977 10 C -0.547 4.547 11 H 0.061 0.939 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.282 1.282 16 H -0.266 1.266 17 H -0.266 1.266 18 C 0.022 3.978 19 H 0.078 0.922 20 C -0.130 4.130 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.051 0.949 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.264 0.736 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 11.644 11.130 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.121 0.879 4 C -0.135 4.135 5 N -0.212 5.212 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.134 4.134 9 C -0.014 4.014 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.207 1.207 16 H -0.191 1.191 17 H -0.190 1.190 18 C -0.086 4.086 19 H 0.096 0.904 20 C -0.188 4.188 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.922 11.921 10.987 20.123 hybrid contribution -0.069 -1.488 -0.539 1.584 sum -11.991 10.433 10.448 19.021 Atomic orbital electron populations 1.21686 0.92846 1.02108 1.02887 1.22773 0.96518 0.98434 0.94538 0.87878 1.23905 0.93809 0.98959 0.96789 1.68948 1.30643 1.16214 1.05411 1.22546 0.98965 0.89340 0.98692 1.21391 0.99410 0.95673 0.97340 1.21405 0.99064 0.94693 0.98255 1.19013 0.93865 0.95161 0.93352 1.21705 1.32808 0.94859 1.09137 0.92127 1.26043 0.95431 1.03546 0.94976 1.70108 1.36472 1.37765 1.13165 0.85457 0.78581 0.78914 0.77840 1.20693 1.19082 1.19034 1.23573 0.92843 0.98124 0.94107 0.90425 1.21605 1.01208 1.00059 0.95923 0.91031 0.91466 0.92929 0.90591 0.91395 0.93769 0.90833 0.93085 0.93255 0.93052 0.93046 0.99396 0.99306 0.92725 0.92558 0.90263 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.79 71.98 0.70 -1.20 16 2 C -0.10 -1.89 4.22 -10.45 -0.04 -1.93 16 3 H 0.10 1.81 8.12 -2.39 -0.02 1.79 16 4 C -0.01 -0.14 6.58 83.57 0.55 0.41 16 5 N -0.49 -13.16 6.20 -902.07 -5.60 -18.76 16 6 C 0.03 0.98 4.82 86.30 0.42 1.40 16 7 C -0.10 -3.70 5.32 30.59 0.16 -3.53 16 8 C -0.10 -4.16 5.15 30.59 0.16 -4.01 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.55 -32.38 9.11 25.60 0.23 -32.14 16 11 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 12 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 13 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 14 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.02 0.46 3.30 42.18 0.14 0.60 16 19 H 0.08 1.55 7.73 -2.38 -0.02 1.54 16 20 C -0.13 -2.34 9.93 71.98 0.71 -1.63 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.77 7.91 -2.38 -0.02 0.75 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 1.61 7.51 -2.39 -0.02 1.59 16 26 H 0.04 1.24 7.56 -2.39 -0.02 1.22 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.84 7.67 -2.38 -0.02 1.83 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H -0.01 -0.75 8.14 -2.38 -0.02 -0.76 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -65.67 299.26 1.34 -64.33 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.98 Total: 5.88 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.64 Total: -40.26 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -5.31 Total: -77.15 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.67 1.34 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.797 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds