Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 113.03896 * 2 1 4 4 C 1.53942 * 113.75361 * 228.28045 * 2 1 3 5 5 H 1.09002 * 113.73539 * 336.32157 * 4 2 1 6 6 C 1.53001 * 113.82780 * 107.59378 * 4 2 1 7 7 C 1.53939 * 86.33845 * 221.96452 * 4 2 1 8 8 N 1.47958 * 86.18151 * 23.72325 * 7 4 2 9 9 C 1.46901 * 110.99904 * 222.41833 * 8 7 4 10 10 C 1.52996 * 109.47168 * 268.47410 * 9 8 7 11 11 C 1.52992 * 109.47173 * 179.97438 * 10 9 8 12 12 C 1.53008 * 109.47313 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99843 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99948 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47275 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.46998 * 120.00141 * 17 15 13 20 20 H 1.48501 * 109.46864 * 239.99987 * 17 15 13 21 21 H 1.09000 * 109.47650 * 191.72334 * 1 2 3 22 22 H 1.09004 * 109.46726 * 311.71855 * 1 2 3 23 23 H 1.08999 * 109.47331 * 71.71574 * 1 2 3 24 24 H 1.09000 * 109.47372 * 178.00689 * 6 4 2 25 25 H 1.09001 * 109.46750 * 298.00575 * 6 4 2 26 26 H 1.08997 * 109.47179 * 58.00605 * 6 4 2 27 27 H 1.08998 * 113.75655 * 138.04280 * 7 4 2 28 28 H 1.09003 * 113.75660 * 269.39972 * 7 4 2 29 29 H 1.09003 * 109.46793 * 28.47257 * 9 8 7 30 30 H 1.08997 * 109.47473 * 148.46892 * 9 8 7 31 31 H 1.08997 * 109.47150 * 300.00061 * 10 9 8 32 32 H 1.08996 * 109.47330 * 59.99951 * 10 9 8 33 33 H 1.08995 * 109.47444 * 299.99628 * 11 10 9 34 34 H 1.09001 * 109.47724 * 60.00206 * 11 10 9 35 35 H 1.08995 * 109.46789 * 300.00307 * 12 11 10 36 36 H 1.09004 * 109.46767 * 60.00247 * 12 11 10 37 37 H 0.97000 * 119.99617 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9566 1.0030 0.0000 4 6 2.1501 -0.9377 -1.0517 5 1 1.4904 -1.7490 -1.3595 6 6 2.7863 -0.2050 -2.2346 7 6 3.1560 -1.3383 0.0425 8 7 2.1261 -0.9014 1.0107 9 6 2.7282 -0.1348 2.1097 10 6 3.0887 -1.0829 3.2552 11 6 3.7164 -0.2846 4.3995 12 6 4.0763 -1.2326 5.5453 13 6 4.6940 -0.4463 6.6728 14 1 4.8172 0.6227 6.5814 15 6 5.1020 -1.0917 7.8208 16 7 4.9515 -2.3934 7.9322 17 14 5.8670 -0.1168 9.2186 18 1 5.9230 1.3199 8.8475 19 1 5.0446 -0.2803 10.4442 20 1 7.2421 -0.6152 9.4751 21 1 -0.3634 -1.0062 0.2088 22 1 -0.3633 0.6839 0.7671 23 1 -0.3634 0.3224 -0.9758 24 1 3.2322 -0.9309 -2.9145 25 1 2.0218 0.3653 -2.7624 26 1 3.5580 0.4728 -1.8697 27 1 3.3652 -2.4075 0.0765 28 1 4.0582 -0.7267 0.0549 29 1 3.6296 0.3640 1.7536 30 1 2.0169 0.6106 2.4653 31 1 2.1874 -1.5817 3.6113 32 1 3.8001 -1.8282 2.8997 33 1 4.6178 0.2138 4.0432 34 1 3.0054 0.4611 4.7553 35 1 3.1747 -1.7307 5.9015 36 1 4.7873 -1.9786 5.1899 37 1 5.2389 -2.8475 8.7397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706785626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = -1.209548 kcal Electronic energy + Delta-G solvation = -13807.189337 eV Core-core repulsion = 11584.249873 eV Total energy + Delta-G solvation = -2222.939465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19236 -35.01187 -32.83599 -31.22941 -30.35470 -28.44693 -25.73565 -23.75739 -22.69910 -20.84182 -20.03996 -19.36514 -16.17014 -15.64514 -15.37711 -15.01378 -14.41303 -14.32557 -13.48989 -13.23202 -12.82266 -12.58526 -12.31754 -11.99807 -11.77581 -11.71143 -11.38540 -11.28456 -10.91099 -10.68659 -10.40811 -10.38695 -10.32559 -10.18010 -9.57407 -9.20605 -8.95431 -8.66962 -8.29756 -5.94626 -3.96728 3.33780 3.40874 3.45333 3.91613 4.30767 4.50190 4.60264 5.13442 5.17381 5.21314 5.25802 5.33585 5.40859 5.52498 5.55777 5.60197 5.65966 5.79513 5.81413 5.87737 5.96620 6.04047 6.14625 6.27720 6.37192 6.49355 6.66411 6.91355 7.04214 7.15128 7.30957 7.75364 7.91651 8.07033 8.49886 9.11109 9.66973 11.16810 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068443 B = 0.004532 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.001970 B = 6176.376962 C = 6232.560322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.118 4.118 5 H 0.097 0.903 6 C -0.144 4.144 7 C 0.005 3.995 8 N -0.476 5.476 9 C 0.023 3.977 10 C -0.107 4.107 11 C -0.110 4.110 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 4.211 -18.379 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.082 4.082 3 H 0.092 0.908 4 C -0.136 4.136 5 H 0.115 0.885 6 C -0.202 4.202 7 C -0.124 4.124 8 N -0.199 5.199 9 C -0.105 4.105 10 C -0.145 4.145 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.279 3.598 -17.897 19.304 hybrid contribution 1.058 1.113 0.663 1.673 sum -5.220 4.711 -17.234 18.613 Atomic orbital electron populations 1.21578 0.93597 1.02670 1.01096 1.23527 0.96569 0.95811 0.92300 0.90794 1.23066 0.97901 0.98711 0.93970 0.88520 1.21754 1.00459 1.00165 0.97778 1.24018 0.94296 1.02209 0.91853 1.68523 1.19914 1.27122 1.04316 1.22756 0.97729 0.96542 0.93507 1.21523 1.00760 0.97852 0.94362 1.21611 0.98560 0.98895 0.95720 1.19098 0.96533 0.94332 0.91691 1.21335 1.39637 0.94158 1.00593 0.92749 1.25038 0.96110 0.94873 0.98541 1.69985 1.47946 1.07924 1.27719 0.86557 0.78952 0.80283 0.82342 1.19785 1.21020 1.21046 0.91624 0.92761 0.92351 0.92389 0.92439 0.92727 0.89575 0.91317 0.94296 0.91440 0.91898 0.92748 0.93790 0.93599 0.96614 0.96723 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.95 37.16 0.37 -0.96 16 2 C 0.03 0.30 3.49 -66.65 -0.23 0.07 16 3 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 4 C -0.12 -1.17 4.11 -89.68 -0.37 -1.54 16 5 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 6 C -0.14 -1.16 9.72 37.16 0.36 -0.80 16 7 C 0.01 0.06 7.52 -2.77 -0.02 0.04 16 8 N -0.48 -6.60 5.96 -230.35 -1.37 -7.97 16 9 C 0.02 0.35 4.81 -3.83 -0.02 0.33 16 10 C -0.11 -1.98 5.53 -26.74 -0.15 -2.12 16 11 C -0.11 -2.38 5.15 -26.73 -0.14 -2.51 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 17 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 7.98 -51.93 -0.41 0.04 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 29 H 0.04 0.58 7.36 -51.93 -0.38 0.19 16 30 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -30.83 300.38 -8.92 -39.75 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -7.04 Total: -5.33 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.74 Total: -21.10 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.64 Total: -34.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.83 -8.92 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.536 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds