Wall clock time and date at job start Mon Mar 30 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 113.03896 * 2 1 4 4 C 1.53942 * 113.75361 * 228.28045 * 2 1 3 5 5 H 1.09002 * 113.73539 * 336.32157 * 4 2 1 6 6 C 1.53001 * 113.82780 * 107.59378 * 4 2 1 7 7 C 1.53939 * 86.33845 * 221.96452 * 4 2 1 8 8 N 1.47958 * 86.18151 * 23.72325 * 7 4 2 9 9 C 1.46901 * 110.99904 * 222.41833 * 8 7 4 10 10 C 1.52996 * 109.47168 * 268.47410 * 9 8 7 11 11 C 1.52992 * 109.47173 * 179.97438 * 10 9 8 12 12 C 1.53008 * 109.47313 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99843 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99948 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47275 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.46998 * 120.00141 * 17 15 13 20 20 H 1.48501 * 109.46864 * 239.99987 * 17 15 13 21 21 H 1.09000 * 109.47650 * 191.72334 * 1 2 3 22 22 H 1.09004 * 109.46726 * 311.71855 * 1 2 3 23 23 H 1.08999 * 109.47331 * 71.71574 * 1 2 3 24 24 H 1.09000 * 109.47372 * 178.00689 * 6 4 2 25 25 H 1.09001 * 109.46750 * 298.00575 * 6 4 2 26 26 H 1.08997 * 109.47179 * 58.00605 * 6 4 2 27 27 H 1.08998 * 113.75655 * 138.04280 * 7 4 2 28 28 H 1.09003 * 113.75660 * 269.39972 * 7 4 2 29 29 H 1.09003 * 109.46793 * 28.47257 * 9 8 7 30 30 H 1.08997 * 109.47473 * 148.46892 * 9 8 7 31 31 H 1.08997 * 109.47150 * 300.00061 * 10 9 8 32 32 H 1.08996 * 109.47330 * 59.99951 * 10 9 8 33 33 H 1.08995 * 109.47444 * 299.99628 * 11 10 9 34 34 H 1.09001 * 109.47724 * 60.00206 * 11 10 9 35 35 H 1.08995 * 109.46789 * 300.00307 * 12 11 10 36 36 H 1.09004 * 109.46767 * 60.00247 * 12 11 10 37 37 H 0.97000 * 119.99617 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9566 1.0030 0.0000 4 6 2.1501 -0.9377 -1.0517 5 1 1.4904 -1.7490 -1.3595 6 6 2.7863 -0.2050 -2.2346 7 6 3.1560 -1.3383 0.0425 8 7 2.1261 -0.9014 1.0107 9 6 2.7282 -0.1348 2.1097 10 6 3.0887 -1.0829 3.2552 11 6 3.7164 -0.2846 4.3995 12 6 4.0763 -1.2326 5.5453 13 6 4.6940 -0.4463 6.6728 14 1 4.8172 0.6227 6.5814 15 6 5.1020 -1.0917 7.8208 16 7 4.9515 -2.3934 7.9322 17 14 5.8670 -0.1168 9.2186 18 1 5.9230 1.3199 8.8475 19 1 5.0446 -0.2803 10.4442 20 1 7.2421 -0.6152 9.4751 21 1 -0.3634 -1.0062 0.2088 22 1 -0.3633 0.6839 0.7671 23 1 -0.3634 0.3224 -0.9758 24 1 3.2322 -0.9309 -2.9145 25 1 2.0218 0.3653 -2.7624 26 1 3.5580 0.4728 -1.8697 27 1 3.3652 -2.4075 0.0765 28 1 4.0582 -0.7267 0.0549 29 1 3.6296 0.3640 1.7536 30 1 2.0169 0.6106 2.4653 31 1 2.1874 -1.5817 3.6113 32 1 3.8001 -1.8282 2.8997 33 1 4.6178 0.2138 4.0432 34 1 3.0054 0.4611 4.7553 35 1 3.1747 -1.7307 5.9015 36 1 4.7873 -1.9786 5.1899 37 1 5.2389 -2.8475 8.7397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706785626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:43 Heat of formation + Delta-G solvation = -20.294929 kcal Electronic energy + Delta-G solvation = -13808.016942 eV Core-core repulsion = 11584.249873 eV Total energy + Delta-G solvation = -2223.767069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14106 -36.74909 -34.74168 -32.63482 -31.19585 -29.96480 -27.25477 -25.20293 -23.84255 -22.24234 -21.74010 -20.28325 -18.44060 -16.80016 -16.62138 -16.30081 -15.93039 -15.66253 -14.65721 -14.36029 -14.28337 -13.77506 -13.69621 -13.36735 -13.18161 -12.88674 -12.63207 -12.58406 -12.42964 -12.34368 -12.02948 -11.86520 -11.56882 -11.36788 -11.29936 -11.12394 -10.83438 -10.57595 -9.71097 -8.21091 -6.33169 1.38806 1.39672 1.53268 2.40080 2.94685 3.11482 3.48161 3.76007 3.96533 4.13105 4.34382 4.38122 4.45956 4.49761 4.52414 4.59056 4.67609 4.78658 4.84297 4.88357 4.90828 5.00094 5.05756 5.14063 5.21311 5.27176 5.32878 5.36057 5.48405 5.53197 5.59985 5.75497 5.84636 6.18990 6.24007 6.84311 7.36396 8.91223 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068443 B = 0.004532 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.001970 B = 6176.376962 C = 6232.560322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.026 3.974 3 H 0.080 0.920 4 C -0.104 4.104 5 H 0.100 0.900 6 C -0.140 4.140 7 C -0.002 4.002 8 N -0.499 5.499 9 C 0.034 3.966 10 C -0.097 4.097 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.050 0.950 35 H -0.012 1.012 36 H -0.012 1.012 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 5.758 -19.281 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 H 0.098 0.902 4 C -0.123 4.123 5 H 0.118 0.882 6 C -0.197 4.197 7 C -0.131 4.131 8 N -0.222 5.222 9 C -0.095 4.095 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.006 0.994 36 H 0.007 0.993 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.212 5.152 -18.819 20.476 hybrid contribution 1.015 0.571 0.929 1.490 sum -5.196 5.723 -17.890 19.489 Atomic orbital electron populations 1.21578 0.92820 1.02027 1.02279 1.23645 0.97188 0.95897 0.91546 0.90230 1.22984 0.96921 0.98448 0.93950 0.88224 1.21727 1.00672 1.00250 0.97060 1.24109 0.94606 1.02003 0.92366 1.68502 1.20774 1.28014 1.04904 1.22549 0.98266 0.95663 0.92994 1.21347 0.99608 0.97923 0.94589 1.21415 0.99171 0.97999 0.94874 1.19029 0.94470 0.94603 0.93379 1.21761 1.40165 0.94702 1.01643 0.92129 1.26050 0.96426 0.95982 1.01621 1.70122 1.48774 1.09851 1.28817 0.85345 0.78012 0.79032 0.78330 1.18484 1.20240 1.20213 0.92666 0.93131 0.90128 0.91516 0.91192 0.92889 0.90089 0.91026 0.93529 0.91169 0.93211 0.93514 0.93095 0.93091 0.99379 0.99337 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.95 71.98 0.72 -1.66 16 2 C 0.03 0.53 3.49 45.02 0.16 0.69 16 3 H 0.08 1.56 7.88 -2.39 -0.02 1.55 16 4 C -0.10 -1.86 4.11 -10.14 -0.04 -1.90 16 5 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 6 C -0.14 -1.88 9.72 71.98 0.70 -1.18 16 7 C 0.00 -0.05 7.52 86.41 0.65 0.60 16 8 N -0.50 -13.36 5.96 -882.68 -5.26 -18.62 16 9 C 0.03 1.00 4.81 86.30 0.41 1.42 16 10 C -0.10 -3.61 5.53 30.59 0.17 -3.44 16 11 C -0.10 -4.21 5.15 30.59 0.16 -4.05 16 12 C 0.02 1.25 4.97 29.85 0.15 1.40 16 13 C -0.54 -32.34 9.11 25.60 0.23 -32.11 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.94 -58.84 13.29 21.45 0.28 -58.55 16 17 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 22 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.74 7.98 -2.39 -0.02 0.72 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.58 7.31 -2.39 -0.02 1.57 16 29 H 0.05 1.31 7.36 -2.39 -0.02 1.29 16 30 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -66.18 300.38 1.80 -64.38 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.98 Total: 5.41 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 3.77 Total: -39.96 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -4.98 Total: -77.17 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.18 1.80 -64.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.085 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds