Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00221 * 2 1 3 5 5 H 1.07999 * 119.99999 * 239.99319 * 4 2 1 6 6 C 1.37877 * 120.00229 * 59.72274 * 4 2 1 7 7 N 1.31514 * 120.00071 * 0.27313 * 6 4 2 8 8 Si 1.86799 * 120.00272 * 180.27672 * 6 4 2 9 9 H 1.48496 * 109.47213 * 89.99486 * 8 6 4 10 10 H 1.48498 * 109.47143 * 209.99895 * 8 6 4 11 11 H 1.48502 * 109.46749 * 329.99616 * 8 6 4 12 12 N 1.46900 * 109.47494 * 119.99517 * 2 1 3 13 13 C 1.46901 * 110.99923 * 154.31676 * 12 2 1 14 14 C 1.46891 * 111.00445 * 278.27712 * 12 2 1 15 15 C 1.52996 * 109.47385 * 86.21181 * 14 12 2 16 16 C 1.52999 * 115.54859 * 44.39895 * 15 14 12 17 17 C 1.52998 * 117.50209 * 258.73150 * 15 14 12 18 18 C 1.53000 * 60.00066 * 252.50994 * 17 15 14 19 19 H 1.09000 * 117.50424 * 107.48769 * 18 17 15 20 20 C 1.52999 * 117.49770 * 252.51085 * 18 17 15 21 21 H 1.09003 * 109.47007 * 310.63408 * 1 2 3 22 22 H 1.08996 * 109.47701 * 70.64182 * 1 2 3 23 23 H 1.09005 * 109.46327 * 190.64169 * 1 2 3 24 24 H 0.96997 * 120.00148 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.46887 * 49.95722 * 13 12 2 26 26 H 1.08995 * 109.47302 * 169.94860 * 13 12 2 27 27 H 1.09003 * 109.47599 * 289.95925 * 13 12 2 28 28 H 1.09001 * 109.47382 * 206.21538 * 14 12 2 29 29 H 1.09010 * 109.46966 * 326.20979 * 14 12 2 30 30 H 1.09003 * 109.47213 * 53.30193 * 16 15 14 31 31 H 1.08998 * 109.47096 * 173.30147 * 16 15 14 32 32 H 1.08999 * 109.47577 * 293.30386 * 16 15 14 33 33 H 1.09002 * 117.49853 * 359.97438 * 17 15 14 34 34 H 1.08999 * 117.50289 * 144.99142 * 17 15 14 35 35 H 1.08998 * 109.47527 * 128.61906 * 20 18 17 36 36 H 1.09004 * 109.47276 * 248.62491 * 20 18 17 37 37 H 1.09006 * 109.46825 * 8.61974 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6946 -0.2426 -2.4827 7 7 0.9384 0.8266 -2.6034 8 14 2.3108 -1.1277 -4.0079 9 1 1.3308 -2.1701 -4.4053 10 1 2.4719 -0.1516 -5.1155 11 1 3.6199 -1.7648 -3.7154 12 7 2.0197 -0.6924 1.1995 13 6 3.3605 -1.2493 0.9753 14 6 2.0092 0.2018 2.3648 15 6 0.6284 0.1659 3.0228 16 6 0.0130 -1.2249 3.1896 17 6 -0.3225 1.3290 2.7336 18 6 0.3361 1.2031 4.1088 19 1 1.1276 1.9112 4.3546 20 6 -0.5492 0.7703 5.2792 21 1 -0.3633 0.6693 0.7799 22 1 -0.3634 0.3406 -0.9695 23 1 -0.3632 -1.0101 0.1898 24 1 0.7005 1.1554 -3.4844 25 1 4.0091 -0.4785 0.5588 26 1 3.7723 -1.5977 1.9224 27 1 3.2951 -2.0847 0.2782 28 1 2.7619 -0.1264 3.0816 29 1 2.2324 1.2194 2.0439 30 1 0.7177 -1.8742 3.7091 31 1 -0.9063 -1.1482 3.7703 32 1 -0.2110 -1.6433 2.2083 33 1 0.0357 2.1202 2.0749 34 1 -1.3865 1.1035 2.6622 35 1 -0.0819 -0.0664 5.7983 36 1 -0.6714 1.6043 5.9703 37 1 -1.5254 0.4646 4.9026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707394220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = 27.459457 kcal Electronic energy + Delta-G solvation = -14970.608632 eV Core-core repulsion = 12748.912349 eV Total energy + Delta-G solvation = -2221.696283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.72921 -36.02920 -32.65353 -29.40039 -29.13277 -27.48770 -26.39362 -24.71458 -22.87691 -20.90299 -19.34434 -18.05096 -16.16851 -15.45060 -14.74020 -14.11762 -13.83213 -13.41207 -13.23648 -12.89339 -12.41415 -12.11893 -11.98228 -11.66276 -11.57748 -11.14874 -11.00763 -10.94297 -10.75283 -10.56796 -10.52437 -10.03241 -9.82317 -9.77973 -9.18699 -8.99333 -8.55250 -8.33564 -7.08086 -5.96736 -4.02508 3.31691 3.38098 3.40708 4.14658 4.43737 4.90840 5.21544 5.28432 5.33865 5.45610 5.59728 5.72742 5.97314 6.00160 6.08576 6.17448 6.19369 6.24070 6.33435 6.41378 6.55053 6.62291 6.63065 6.71440 6.85431 6.94870 7.08119 7.34203 7.40300 7.61959 7.84347 7.91860 8.29771 8.44626 8.70496 9.05732 9.62974 11.08902 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050622 B = 0.008335 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.989259 B = 3358.533994 C = 3621.915559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.215 3.785 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.067 0.933 6 C 0.059 3.941 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.536 5.536 13 C 0.045 3.955 14 C 0.091 3.909 15 C -0.094 4.094 16 C -0.099 4.099 17 C -0.162 4.162 18 C -0.169 4.169 19 H 0.094 0.906 20 C -0.115 4.115 21 H 0.027 0.973 22 H 0.078 0.922 23 H 0.026 0.974 24 H 0.259 0.741 25 H 0.019 0.981 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -0.583 10.886 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.109 3.891 3 H 0.015 0.985 4 C -0.556 4.556 5 H 0.085 0.915 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.104 4.104 14 C -0.038 4.038 15 C -0.095 4.095 16 C -0.156 4.156 17 C -0.199 4.199 18 C -0.187 4.187 19 H 0.112 0.888 20 C -0.172 4.172 21 H 0.046 0.954 22 H 0.097 0.903 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.292 -0.861 10.822 10.933 hybrid contribution 0.858 0.372 -1.172 1.499 sum -0.434 -0.489 9.650 9.672 Atomic orbital electron populations 1.21974 0.97537 0.98367 1.01581 1.19296 0.92875 0.91683 0.85240 0.98478 1.21536 1.31042 1.12666 0.90332 0.91514 1.24946 0.95187 0.95067 0.98979 1.69913 1.36772 1.23045 1.23232 0.86581 0.79177 0.79385 0.82750 1.20691 1.21370 1.20003 1.62054 1.22909 1.35736 1.05344 1.22206 0.89795 0.99664 0.98705 1.21608 0.93593 0.95297 0.93273 1.21504 0.96678 0.91603 0.99671 1.21126 0.98148 0.94020 1.02258 1.23105 0.98362 1.01409 0.96981 1.22527 1.02301 1.03227 0.90691 0.88767 1.21287 0.98738 1.00466 0.96681 0.95385 0.90312 0.95453 0.93105 0.96271 0.94708 0.91140 0.92638 0.95232 0.93281 0.94091 0.90694 0.89064 0.89344 0.92612 0.93002 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.37 37.16 0.31 -3.06 16 2 C 0.22 5.48 2.21 -68.87 -0.15 5.33 16 3 H 0.00 -0.07 7.49 -51.93 -0.39 -0.46 16 4 C -0.52 -14.24 7.87 -34.44 -0.27 -14.51 16 5 H 0.07 1.80 5.31 -52.49 -0.28 1.53 16 6 C 0.06 1.66 5.26 -17.82 -0.09 1.56 16 7 N -0.89 -25.70 11.29 55.43 0.63 -25.07 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.54 -11.66 3.85 -236.29 -0.91 -12.57 16 13 C 0.04 0.91 8.55 60.07 0.51 1.42 16 14 C 0.09 1.72 5.13 -3.83 -0.02 1.70 16 15 C -0.09 -1.58 1.55 -154.51 -0.24 -1.82 16 16 C -0.10 -1.59 8.90 37.16 0.33 -1.26 16 17 C -0.16 -2.66 6.73 -26.73 -0.18 -2.84 16 18 C -0.17 -2.42 6.13 -90.62 -0.56 -2.97 16 19 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 20 C -0.11 -1.37 8.89 37.16 0.33 -1.04 16 21 H 0.03 0.61 4.00 -51.93 -0.21 0.41 16 22 H 0.08 2.16 5.85 -51.93 -0.30 1.86 16 23 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 26 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 27 H 0.07 1.49 6.18 -51.93 -0.32 1.17 16 28 H 0.06 0.95 7.49 -51.93 -0.39 0.57 16 29 H 0.03 0.59 7.30 -51.92 -0.38 0.21 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.58 6.48 -51.93 -0.34 0.24 16 32 H 0.07 1.39 6.66 -51.93 -0.35 1.04 16 33 H 0.09 1.63 7.82 -51.93 -0.41 1.22 16 34 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -28.22 279.19 -7.29 -35.50 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.16 Total: -1.04 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.03 Total: -17.48 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.28 Total: -37.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.22 -7.29 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707394220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.964 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds