Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.56597 * 2 1 4 4 C 1.53001 * 117.50114 * 214.30571 * 2 1 3 5 5 C 1.53002 * 60.00152 * 252.51230 * 4 2 1 6 6 C 1.53003 * 117.49478 * 107.51118 * 5 4 2 7 7 C 1.52995 * 117.49668 * 252.50872 * 5 4 2 8 8 N 1.46906 * 109.46978 * 248.60904 * 7 5 4 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47282 * 89.99593 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 H 1.08991 * 109.47147 * 274.31447 * 1 2 3 21 21 H 1.09000 * 109.46755 * 34.31459 * 1 2 3 22 22 H 1.09002 * 109.47040 * 154.31404 * 1 2 3 23 23 H 1.09000 * 117.49726 * 145.01838 * 4 2 1 24 24 H 1.09001 * 117.49526 * 0.02562 * 4 2 1 25 25 H 1.08999 * 109.46592 * 231.24788 * 6 5 4 26 26 H 1.08994 * 109.47519 * 351.25043 * 6 5 4 27 27 H 1.09001 * 109.46475 * 111.25388 * 6 5 4 28 28 H 1.08995 * 109.46859 * 128.61196 * 7 5 4 29 29 H 1.09002 * 109.47639 * 8.60864 * 7 5 4 30 30 H 1.00899 * 110.99995 * 56.04730 * 8 7 5 31 31 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 32 32 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 36 36 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 37 37 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 1.3591 -2.1565 1.4715 7 6 3.5489 -0.7759 1.4715 8 7 4.0713 -1.9720 2.1458 9 6 5.3336 -1.6776 2.8370 10 6 5.8458 -2.9445 3.5251 11 6 7.1602 -2.6378 4.2455 12 6 7.6644 -3.8855 4.9238 13 1 7.1032 -4.8052 4.8488 14 6 8.8421 -3.8530 5.6400 15 7 9.5258 -2.7331 5.7307 16 14 9.4675 -5.3997 6.4801 17 1 10.3457 -6.1497 5.5464 18 1 10.2384 -5.0269 7.6932 19 1 8.3152 -6.2524 6.8684 20 1 -0.3633 0.0773 1.0247 21 1 -0.3633 0.8488 -0.5793 22 1 -0.3633 -0.9261 -0.4454 23 1 3.1715 -0.8752 -1.2682 24 1 1.6112 -1.8583 -1.2685 25 1 0.7313 -1.6577 2.2098 26 1 0.7285 -2.6592 0.7384 27 1 1.9929 -2.8902 1.9697 28 1 3.3700 0.0074 2.2081 29 1 4.2753 -0.4259 0.7380 30 1 4.1846 -2.7339 1.4941 31 1 5.1668 -0.9006 3.5831 32 1 6.0725 -1.3336 2.1132 33 1 5.1070 -3.2889 4.2488 34 1 6.0127 -3.7211 2.7788 35 1 7.8992 -2.2932 3.5221 36 1 6.9929 -1.8612 4.9919 37 1 10.3545 -2.7104 6.2343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707703079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -4.949887 kcal Electronic energy + Delta-G solvation = -13615.588470 eV Core-core repulsion = 11392.486812 eV Total energy + Delta-G solvation = -2223.101658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.97537 -35.88257 -33.36748 -31.29841 -29.25961 -27.92736 -26.69592 -24.48146 -22.22241 -20.99895 -20.17543 -18.55655 -16.36157 -15.89987 -15.17557 -14.69209 -14.35442 -13.89868 -13.54742 -13.36314 -13.25641 -12.48057 -12.24363 -12.02532 -11.96481 -11.65809 -11.44118 -11.38203 -11.00999 -10.79304 -10.53998 -10.49217 -9.92713 -9.66888 -9.53904 -9.27630 -9.01461 -8.31472 -8.10744 -5.96686 -3.98635 3.34339 3.40289 3.44320 3.60078 4.29753 4.49747 4.65933 4.75481 4.92016 5.10952 5.17658 5.39072 5.50285 5.59862 5.63880 5.67474 5.71347 5.83882 5.86049 5.89554 5.97058 6.09290 6.12775 6.20454 6.36299 6.48474 6.76150 6.81266 7.17711 7.39775 7.68281 7.72356 7.87537 8.04085 8.47453 9.08677 9.65185 11.14836 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.083366 B = 0.004222 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.787849 B = 6631.070029 C = 6783.527674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.152 4.152 3 H 0.100 0.900 4 C -0.177 4.177 5 C -0.116 4.116 6 C -0.109 4.109 7 C 0.095 3.905 8 N -0.686 5.686 9 C 0.058 3.942 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.338 0.662 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 4.358 -11.271 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.171 4.171 3 H 0.118 0.882 4 C -0.214 4.214 5 C -0.117 4.117 6 C -0.166 4.166 7 C -0.035 4.035 8 N -0.317 5.317 9 C -0.070 4.070 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.578 4.527 -10.618 19.389 hybrid contribution 1.163 -0.601 -0.346 1.354 sum -14.415 3.926 -10.964 18.532 Atomic orbital electron populations 1.21303 0.92948 1.01541 1.01770 1.22410 0.95217 0.94419 1.05042 0.88192 1.23314 1.02332 1.01525 0.94237 1.21646 0.97693 0.99868 0.92449 1.21228 0.98264 0.97744 0.99358 1.21424 0.92506 0.93518 0.96045 1.60561 1.30493 1.07432 1.33182 1.22130 0.87969 0.99992 0.96915 1.21615 0.99439 0.94602 0.98788 1.19070 0.90572 0.96970 0.95007 1.21268 1.06660 0.96298 1.31422 0.92663 1.25039 0.96874 0.96088 0.96587 1.69973 1.15823 1.25869 1.42002 0.86590 0.78895 0.83446 0.79051 1.20718 1.21251 1.19835 0.92157 0.92549 0.92630 0.89219 0.88966 0.92685 0.93560 0.90017 0.90956 0.95538 0.84482 0.91529 0.95899 0.92551 0.93689 0.96846 0.96578 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.22 37.16 0.34 -0.65 16 2 C -0.15 -1.49 6.13 -90.62 -0.56 -2.04 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.18 -1.77 9.47 -26.73 -0.25 -2.02 16 5 C -0.12 -1.30 2.51 -154.51 -0.39 -1.68 16 6 C -0.11 -1.21 8.76 37.16 0.33 -0.88 16 7 C 0.09 1.23 5.82 -3.82 -0.02 1.21 16 8 N -0.69 -10.28 5.02 -113.78 -0.57 -10.85 16 9 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H 0.06 0.50 8.02 -51.93 -0.42 0.09 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.45 7.77 -51.93 -0.40 0.04 16 23 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 24 H 0.09 0.85 7.96 -51.93 -0.41 0.44 16 25 H 0.05 0.60 8.03 -51.93 -0.42 0.18 16 26 H 0.05 0.45 7.77 -51.93 -0.40 0.05 16 27 H 0.08 1.02 6.69 -51.93 -0.35 0.67 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.34 7.90 -51.93 -0.41 -0.07 16 30 H 0.34 4.82 8.61 -39.29 -0.34 4.48 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 301.84 15.07 4.55 4.55 Total: -1.00 -29.83 301.84 -8.49 -38.31 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.91 Total: -1.43 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.27 Total: -20.84 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.16 Total: -37.56 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.83 -8.49 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.362 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds