Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.56597 * 2 1 4 4 C 1.53001 * 117.50114 * 214.30571 * 2 1 3 5 5 C 1.53002 * 60.00152 * 252.51230 * 4 2 1 6 6 C 1.53003 * 117.49478 * 107.51118 * 5 4 2 7 7 C 1.52995 * 117.49668 * 252.50872 * 5 4 2 8 8 N 1.46906 * 109.46978 * 248.60904 * 7 5 4 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47282 * 89.99593 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 H 1.08991 * 109.47147 * 274.31447 * 1 2 3 21 21 H 1.09000 * 109.46755 * 34.31459 * 1 2 3 22 22 H 1.09002 * 109.47040 * 154.31404 * 1 2 3 23 23 H 1.09000 * 117.49726 * 145.01838 * 4 2 1 24 24 H 1.09001 * 117.49526 * 0.02562 * 4 2 1 25 25 H 1.08999 * 109.46592 * 231.24788 * 6 5 4 26 26 H 1.08994 * 109.47519 * 351.25043 * 6 5 4 27 27 H 1.09001 * 109.46475 * 111.25388 * 6 5 4 28 28 H 1.08995 * 109.46859 * 128.61196 * 7 5 4 29 29 H 1.09002 * 109.47639 * 8.60864 * 7 5 4 30 30 H 1.00899 * 110.99995 * 56.04730 * 8 7 5 31 31 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 32 32 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 36 36 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 37 37 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 1.3591 -2.1565 1.4715 7 6 3.5489 -0.7759 1.4715 8 7 4.0713 -1.9720 2.1458 9 6 5.3336 -1.6776 2.8370 10 6 5.8458 -2.9445 3.5251 11 6 7.1602 -2.6378 4.2455 12 6 7.6644 -3.8855 4.9238 13 1 7.1032 -4.8052 4.8488 14 6 8.8421 -3.8530 5.6400 15 7 9.5258 -2.7331 5.7307 16 14 9.4675 -5.3997 6.4801 17 1 10.3457 -6.1497 5.5464 18 1 10.2384 -5.0269 7.6932 19 1 8.3152 -6.2524 6.8684 20 1 -0.3633 0.0773 1.0247 21 1 -0.3633 0.8488 -0.5793 22 1 -0.3633 -0.9261 -0.4454 23 1 3.1715 -0.8752 -1.2682 24 1 1.6112 -1.8583 -1.2685 25 1 0.7313 -1.6577 2.2098 26 1 0.7285 -2.6592 0.7384 27 1 1.9929 -2.8902 1.9697 28 1 3.3700 0.0074 2.2081 29 1 4.2753 -0.4259 0.7380 30 1 4.1846 -2.7339 1.4941 31 1 5.1668 -0.9006 3.5831 32 1 6.0725 -1.3336 2.1132 33 1 5.1070 -3.2889 4.2488 34 1 6.0127 -3.7211 2.7788 35 1 7.8992 -2.2932 3.5221 36 1 6.9929 -1.8612 4.9919 37 1 10.3545 -2.7104 6.2343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707703079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -21.791974 kcal Electronic energy + Delta-G solvation = -13616.318797 eV Core-core repulsion = 11392.486812 eV Total energy + Delta-G solvation = -2223.831986 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85870 -37.31428 -35.31951 -33.08741 -30.30630 -28.73208 -28.30876 -25.97673 -23.88576 -22.00869 -21.77330 -19.46302 -18.48294 -17.13970 -16.56015 -16.30520 -15.69982 -15.18991 -14.75932 -14.44655 -14.25667 -14.06114 -13.57456 -13.38746 -13.10794 -12.88130 -12.75780 -12.67752 -12.46114 -12.27631 -12.23186 -11.88745 -11.53313 -11.40610 -11.15616 -10.66732 -10.55558 -10.34433 -9.35625 -8.20334 -6.31557 1.40197 1.41932 1.53379 2.41192 2.77563 3.12710 3.21423 3.81862 3.94100 3.99980 4.17222 4.25220 4.35021 4.46936 4.61759 4.70666 4.72288 4.90963 4.93020 4.94595 4.99103 5.05940 5.11513 5.16252 5.21203 5.25068 5.29159 5.44405 5.51810 5.60945 5.74691 5.85523 6.06491 6.26999 6.48639 6.85439 7.37753 8.91739 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.083366 B = 0.004222 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.787849 B = 6631.070029 C = 6783.527674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.146 4.146 3 H 0.101 0.899 4 C -0.171 4.171 5 C -0.130 4.130 6 C -0.104 4.104 7 C 0.096 3.904 8 N -0.683 5.683 9 C 0.071 3.929 10 C -0.091 4.091 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.344 0.656 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.053 0.947 34 H 0.051 0.949 35 H -0.010 1.010 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.386 3.520 -11.937 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.165 4.165 3 H 0.119 0.881 4 C -0.208 4.208 5 C -0.130 4.130 6 C -0.162 4.162 7 C -0.033 4.033 8 N -0.314 5.314 9 C -0.058 4.058 10 C -0.129 4.129 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.162 0.838 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.629 3.688 -11.301 20.441 hybrid contribution 1.472 -0.290 -0.163 1.509 sum -15.157 3.398 -11.464 19.305 Atomic orbital electron populations 1.21319 0.91751 1.02366 1.02017 1.22512 0.96149 0.94124 1.03689 0.88074 1.23367 1.02575 1.01742 0.93146 1.21561 0.97053 1.01213 0.93195 1.21170 0.98076 0.97352 0.99568 1.21433 0.93548 0.92420 0.95904 1.60483 1.28504 1.08565 1.33870 1.21832 0.89245 0.97887 0.96801 1.21363 0.96641 0.96366 0.98562 1.18980 0.92643 0.95578 0.94138 1.21709 1.07268 0.97192 1.31982 0.92175 1.26022 0.97056 0.99734 0.97217 1.70106 1.16337 1.28293 1.42772 0.85413 0.78511 0.79007 0.77911 1.19674 1.20684 1.18698 0.92258 0.91362 0.92151 0.89205 0.87952 0.92849 0.92214 0.91595 0.91568 0.95378 0.83792 0.92161 0.96110 0.92831 0.93054 0.99142 0.99075 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.22 71.98 0.66 -1.02 16 2 C -0.15 -2.56 6.13 -10.79 -0.07 -2.62 16 3 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.17 -3.05 9.47 30.60 0.29 -2.76 16 5 C -0.13 -2.69 2.51 -52.18 -0.13 -2.82 16 6 C -0.10 -2.16 8.76 71.98 0.63 -1.53 16 7 C 0.10 2.41 5.82 86.30 0.50 2.91 16 8 N -0.68 -19.95 5.02 -513.88 -2.58 -22.53 16 9 C 0.07 2.55 5.69 86.30 0.49 3.04 16 10 C -0.09 -3.89 5.41 30.59 0.17 -3.72 16 11 C 0.02 1.32 4.97 29.85 0.15 1.47 16 12 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 15 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 16 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H 0.06 0.87 8.02 -2.39 -0.02 0.85 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.06 0.81 7.77 -2.39 -0.02 0.79 16 23 H 0.09 1.60 8.05 -2.39 -0.02 1.58 16 24 H 0.10 1.62 7.96 -2.39 -0.02 1.60 16 25 H 0.05 1.09 8.03 -2.39 -0.02 1.08 16 26 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 27 H 0.07 1.57 6.69 -2.39 -0.02 1.55 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.03 0.70 7.90 -2.39 -0.02 0.68 16 30 H 0.34 9.42 8.61 -89.69 -0.77 8.65 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -63.25 301.84 3.35 -59.90 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.23 Total: 11.65 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 3.39 Total: -38.32 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.30 Total: -80.22 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.25 3.35 -59.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds