Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56418 * 2 1 4 4 C 1.53069 * 117.51197 * 145.70770 * 2 1 3 5 5 C 1.53000 * 59.98631 * 107.47600 * 4 2 1 6 6 C 1.52992 * 117.49864 * 107.50078 * 5 4 2 7 7 C 1.53000 * 117.49969 * 252.49990 * 5 4 2 8 8 N 1.46895 * 109.47239 * 248.74487 * 7 5 4 9 9 C 1.46896 * 111.00306 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47496 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47346 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46931 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.09001 * 109.47315 * 205.68307 * 1 2 3 21 21 H 1.09004 * 109.47247 * 325.68837 * 1 2 3 22 22 H 1.08999 * 109.47119 * 85.67919 * 1 2 3 23 23 H 1.09007 * 117.51215 * 359.97438 * 4 2 1 24 24 H 1.08998 * 117.49774 * 214.95966 * 4 2 1 25 25 H 1.08997 * 109.47289 * 231.25493 * 6 5 4 26 26 H 1.09001 * 109.47448 * 351.25220 * 6 5 4 27 27 H 1.09005 * 109.47431 * 111.25376 * 6 5 4 28 28 H 1.09001 * 109.47170 * 128.74714 * 7 5 4 29 29 H 1.09002 * 109.47089 * 8.74495 * 7 5 4 30 30 H 1.00907 * 111.00152 * 56.04401 * 8 7 5 31 31 H 1.09000 * 109.47017 * 60.00110 * 9 8 7 32 32 H 1.09004 * 109.47072 * 300.00147 * 9 8 7 33 33 H 1.09004 * 109.47368 * 60.00058 * 10 9 8 34 34 H 1.09004 * 109.47108 * 300.00159 * 10 9 8 35 35 H 1.09000 * 109.46986 * 60.00254 * 11 10 9 36 36 H 1.08993 * 109.47662 * 300.00031 * 11 10 9 37 37 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 0.7649 5 6 2.2364 -1.1210 -0.7651 6 6 3.5486 -0.7758 -1.4719 7 6 1.3587 -2.1561 -1.4716 8 7 2.2123 -3.1447 -2.1439 9 6 1.4021 -4.1571 -2.8341 10 6 2.3239 -5.1666 -3.5212 11 6 1.4800 -6.2214 -4.2395 12 6 2.3881 -7.2153 -4.9168 13 1 3.4599 -7.1058 -4.8420 14 6 1.8505 -8.2644 -5.6320 15 7 2.6430 -9.1320 -6.2226 16 14 -0.0033 -8.4534 -5.7620 17 1 -0.4954 -9.2917 -4.6395 18 1 -0.6430 -7.1147 -5.6975 19 1 -0.3453 -9.1037 -7.0525 20 1 -0.3634 -0.9261 0.4454 21 1 -0.3634 0.8489 0.5793 22 1 -0.3633 0.0774 -1.0247 23 1 1.6122 -1.8593 1.2685 24 1 3.1723 -0.8758 1.2678 25 1 3.3691 0.0061 -2.2098 26 1 4.2746 -0.4238 -0.7390 27 1 3.9372 -1.6637 -1.9707 28 1 0.7306 -1.6569 -2.2095 29 1 0.7283 -2.6591 -0.7384 30 1 2.8496 -3.5757 -1.4910 31 1 0.7739 -3.6722 -3.5813 32 1 0.7722 -4.6740 -2.1099 33 1 2.9525 -5.6516 -2.7743 34 1 2.9534 -4.6494 -4.2454 35 1 0.8512 -5.7367 -4.9864 36 1 0.8508 -6.7385 -3.5151 37 1 2.2648 -9.8703 -6.7254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707703083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -1.262942 kcal Electronic energy + Delta-G solvation = -13724.009936 eV Core-core repulsion = 11501.068156 eV Total energy + Delta-G solvation = -2222.941780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04443 -35.94214 -33.33987 -31.45472 -29.95185 -27.47919 -26.95976 -24.65489 -22.01314 -21.19442 -20.17545 -18.56777 -16.68402 -15.83346 -15.25487 -14.88407 -14.27675 -14.03443 -13.75518 -13.15520 -12.99732 -12.78886 -12.51942 -12.26374 -11.98270 -11.79511 -11.67941 -11.51304 -11.05131 -10.88847 -10.73846 -10.04114 -9.87799 -9.72778 -9.61040 -9.45555 -9.13884 -8.50737 -8.18672 -6.01127 -3.98659 3.32458 3.39735 3.43903 3.55740 4.29088 4.47987 4.53890 4.67868 4.90037 5.06902 5.13879 5.32877 5.45216 5.53043 5.61960 5.64184 5.66618 5.74108 5.77858 5.85695 5.88743 6.02784 6.08386 6.17234 6.20880 6.42895 6.58473 6.62191 6.95073 7.26056 7.39275 7.47461 7.61836 7.83739 8.58424 9.04600 9.61653 11.12525 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058007 B = 0.004831 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.587924 B = 5794.564799 C = 6119.432543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.177 4.177 5 C -0.117 4.117 6 C -0.111 4.111 7 C 0.097 3.903 8 N -0.686 5.686 9 C 0.056 3.944 10 C -0.099 4.099 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.266 1.266 19 H -0.288 1.288 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.339 0.661 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 17.188 12.637 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.214 4.214 5 C -0.117 4.117 6 C -0.168 4.168 7 C -0.033 4.033 8 N -0.317 5.317 9 C -0.072 4.072 10 C -0.137 4.137 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.190 1.190 19 H -0.214 1.214 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.376 17.407 11.951 21.383 hybrid contribution -1.310 -0.758 0.693 1.665 sum -4.686 16.649 12.644 21.425 Atomic orbital electron populations 1.21341 0.93074 1.01702 1.01866 1.22436 0.95146 0.94374 1.04985 0.88024 1.23331 1.02376 1.01506 0.94192 1.21638 0.98587 0.99014 0.92495 1.21265 0.93541 1.02604 0.99419 1.21389 0.93603 0.92275 0.96010 1.60533 1.20120 1.17626 1.33382 1.22149 0.95826 0.92302 0.96962 1.21438 0.97907 0.95339 0.99014 1.19548 0.96014 0.94289 0.95271 1.21164 0.94763 1.08633 1.31079 0.91019 1.25044 0.97886 0.95581 0.95090 1.69923 1.34936 1.14996 1.34581 0.86764 0.86417 0.78602 0.77408 1.20388 1.19047 1.21402 0.92616 0.92419 0.92121 0.89134 0.88992 0.92696 0.93513 0.89877 0.90953 0.95509 0.84308 0.91556 0.95929 0.93076 0.91914 0.96633 0.97326 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.15 -1.41 6.13 -90.58 -0.56 -1.97 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.18 -1.70 9.47 -26.70 -0.25 -1.95 16 5 C -0.12 -1.26 2.50 -154.51 -0.39 -1.64 16 6 C -0.11 -1.20 9.73 37.15 0.36 -0.84 16 7 C 0.10 1.19 4.85 -3.83 -0.02 1.17 16 8 N -0.69 -9.79 5.02 -113.78 -0.57 -10.36 16 9 C 0.06 0.93 5.68 -3.83 -0.02 0.91 16 10 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 11 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.40 13.96 55.43 0.77 -27.62 16 16 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H 0.05 0.49 7.77 -51.93 -0.40 0.08 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 23 H 0.09 0.87 7.96 -51.93 -0.41 0.45 16 24 H 0.09 0.81 8.05 -51.93 -0.42 0.40 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 27 H 0.08 1.01 6.70 -51.93 -0.35 0.66 16 28 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.03 0.33 7.77 -51.93 -0.40 -0.08 16 30 H 0.34 4.63 8.62 -39.29 -0.34 4.29 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -30.25 298.25 -8.07 -38.33 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.88 Total: -1.02 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -1.22 Total: -21.25 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.20 Total: -37.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.25 -8.07 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.062 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds