Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56418 * 2 1 4 4 C 1.53069 * 117.51197 * 145.70770 * 2 1 3 5 5 C 1.53000 * 59.98631 * 107.47600 * 4 2 1 6 6 C 1.52992 * 117.49864 * 107.50078 * 5 4 2 7 7 C 1.53000 * 117.49969 * 252.49990 * 5 4 2 8 8 N 1.46895 * 109.47239 * 248.74487 * 7 5 4 9 9 C 1.46896 * 111.00306 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47496 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47346 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46931 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.09001 * 109.47315 * 205.68307 * 1 2 3 21 21 H 1.09004 * 109.47247 * 325.68837 * 1 2 3 22 22 H 1.08999 * 109.47119 * 85.67919 * 1 2 3 23 23 H 1.09007 * 117.51215 * 359.97438 * 4 2 1 24 24 H 1.08998 * 117.49774 * 214.95966 * 4 2 1 25 25 H 1.08997 * 109.47289 * 231.25493 * 6 5 4 26 26 H 1.09001 * 109.47448 * 351.25220 * 6 5 4 27 27 H 1.09005 * 109.47431 * 111.25376 * 6 5 4 28 28 H 1.09001 * 109.47170 * 128.74714 * 7 5 4 29 29 H 1.09002 * 109.47089 * 8.74495 * 7 5 4 30 30 H 1.00907 * 111.00152 * 56.04401 * 8 7 5 31 31 H 1.09000 * 109.47017 * 60.00110 * 9 8 7 32 32 H 1.09004 * 109.47072 * 300.00147 * 9 8 7 33 33 H 1.09004 * 109.47368 * 60.00058 * 10 9 8 34 34 H 1.09004 * 109.47108 * 300.00159 * 10 9 8 35 35 H 1.09000 * 109.46986 * 60.00254 * 11 10 9 36 36 H 1.08993 * 109.47662 * 300.00031 * 11 10 9 37 37 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 0.7649 5 6 2.2364 -1.1210 -0.7651 6 6 3.5486 -0.7758 -1.4719 7 6 1.3587 -2.1561 -1.4716 8 7 2.2123 -3.1447 -2.1439 9 6 1.4021 -4.1571 -2.8341 10 6 2.3239 -5.1666 -3.5212 11 6 1.4800 -6.2214 -4.2395 12 6 2.3881 -7.2153 -4.9168 13 1 3.4599 -7.1058 -4.8420 14 6 1.8505 -8.2644 -5.6320 15 7 2.6430 -9.1320 -6.2226 16 14 -0.0033 -8.4534 -5.7620 17 1 -0.4954 -9.2917 -4.6395 18 1 -0.6430 -7.1147 -5.6975 19 1 -0.3453 -9.1037 -7.0525 20 1 -0.3634 -0.9261 0.4454 21 1 -0.3634 0.8489 0.5793 22 1 -0.3633 0.0774 -1.0247 23 1 1.6122 -1.8593 1.2685 24 1 3.1723 -0.8758 1.2678 25 1 3.3691 0.0061 -2.2098 26 1 4.2746 -0.4238 -0.7390 27 1 3.9372 -1.6637 -1.9707 28 1 0.7306 -1.6569 -2.2095 29 1 0.7283 -2.6591 -0.7384 30 1 2.8496 -3.5757 -1.4910 31 1 0.7739 -3.6722 -3.5813 32 1 0.7722 -4.6740 -2.1099 33 1 2.9525 -5.6516 -2.7743 34 1 2.9534 -4.6494 -4.2454 35 1 0.8512 -5.7367 -4.9864 36 1 0.8508 -6.7385 -3.5151 37 1 2.2648 -9.8703 -6.7254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707703083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -19.289745 kcal Electronic energy + Delta-G solvation = -13724.791636 eV Core-core repulsion = 11501.068156 eV Total energy + Delta-G solvation = -2223.723481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88220 -37.29290 -35.23649 -33.28592 -30.84094 -28.98906 -27.79929 -26.07558 -23.59455 -21.93564 -21.92790 -19.49742 -18.86093 -16.94874 -16.49306 -16.09179 -15.84889 -15.21673 -15.10107 -14.68552 -14.03377 -13.95488 -13.73831 -13.49176 -13.32382 -12.94721 -12.87042 -12.63016 -12.43061 -12.25639 -11.94030 -11.80484 -11.54013 -11.45879 -11.27746 -10.76269 -10.68792 -10.33551 -9.32341 -8.29290 -6.33660 1.35785 1.38233 1.50518 2.36732 2.77564 3.05947 3.23791 3.77631 3.90873 4.00869 4.19439 4.25016 4.32241 4.45679 4.61877 4.67660 4.72093 4.86185 4.91144 4.94488 4.95957 4.98378 5.06523 5.08995 5.14563 5.21701 5.28552 5.44748 5.51966 5.56267 5.61562 5.66687 6.11953 6.30040 6.48555 6.74686 7.30986 8.87836 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058007 B = 0.004831 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.587924 B = 5794.564799 C = 6119.432543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.100 3.900 8 N -0.689 5.689 9 C 0.069 3.931 10 C -0.090 4.090 11 C -0.011 4.011 12 C -0.535 4.535 13 H 0.029 0.971 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.246 1.246 19 H -0.283 1.283 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.343 0.657 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 18.532 13.856 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 H 0.128 0.872 4 C -0.210 4.210 5 C -0.132 4.132 6 C -0.165 4.165 7 C -0.029 4.029 8 N -0.320 5.320 9 C -0.060 4.060 10 C -0.128 4.128 11 C -0.048 4.048 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.195 4.195 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.170 1.170 19 H -0.209 1.209 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.312 18.774 13.189 23.551 hybrid contribution -0.585 -1.163 0.322 1.341 sum -5.896 17.611 13.510 22.966 Atomic orbital electron populations 1.21362 0.92482 1.02224 1.01972 1.22531 0.95640 0.94388 1.03595 0.87180 1.23381 1.02830 1.01558 0.93198 1.21573 0.98632 0.99755 0.93194 1.21214 0.93946 1.01767 0.99614 1.21377 0.93574 0.91991 0.95926 1.60467 1.20262 1.17210 1.34075 1.21880 0.94998 0.91954 0.97128 1.21259 0.97821 0.95196 0.98543 1.19496 0.95695 0.94198 0.95458 1.21530 0.93753 1.10201 1.31782 0.95247 1.26077 1.03895 0.95025 0.94507 1.70083 1.37659 1.15937 1.35729 0.85593 0.79181 0.79625 0.77848 1.19043 1.16953 1.20897 0.92827 0.91079 0.92353 0.89046 0.88174 0.92881 0.92362 0.91550 0.91310 0.95114 0.83905 0.91375 0.95178 0.93491 0.93262 0.96179 0.96319 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.21 71.98 0.66 -1.16 16 2 C -0.14 -2.33 6.13 -10.77 -0.07 -2.40 16 3 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.17 -2.92 9.47 30.62 0.29 -2.63 16 5 C -0.13 -2.57 2.50 -52.18 -0.13 -2.70 16 6 C -0.11 -2.19 9.73 71.98 0.70 -1.49 16 7 C 0.10 2.29 4.85 86.30 0.42 2.70 16 8 N -0.69 -18.74 5.02 -513.90 -2.58 -21.32 16 9 C 0.07 2.19 5.68 86.30 0.49 2.68 16 10 C -0.09 -3.61 5.41 30.59 0.17 -3.44 16 11 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 12 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 13 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 14 C 0.00 0.08 5.47 84.66 0.46 0.54 16 15 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 16 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H 0.05 0.81 7.77 -2.39 -0.02 0.79 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 0.89 8.02 -2.39 -0.02 0.87 16 23 H 0.09 1.54 7.96 -2.38 -0.02 1.52 16 24 H 0.10 1.52 8.05 -2.39 -0.02 1.51 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.02 7.90 -2.39 -0.02 1.00 16 27 H 0.07 1.56 6.70 -2.38 -0.02 1.55 16 28 H 0.07 1.61 8.02 -2.39 -0.02 1.60 16 29 H 0.03 0.68 7.77 -2.39 -0.02 0.66 16 30 H 0.34 8.96 8.62 -89.69 -0.77 8.19 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 36 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 37 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -65.04 298.25 3.14 -61.89 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.18 Total: 13.23 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.36 Total: -39.83 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.28 Total: -82.10 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -65.04 3.14 -61.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.605 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds