Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56377 * 2 1 4 4 C 1.53001 * 117.49936 * 145.69104 * 2 1 3 5 5 C 1.52998 * 60.00347 * 107.48999 * 4 2 1 6 6 C 1.52997 * 117.50034 * 252.51286 * 5 4 2 7 7 C 1.53000 * 117.50037 * 107.50977 * 5 4 2 8 8 N 1.46900 * 109.47173 * 111.25576 * 7 5 4 9 9 C 1.46894 * 111.00279 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47423 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47466 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99997 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99811 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99673 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00065 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47239 * 89.99609 * 16 14 12 18 18 H 1.48510 * 109.46923 * 209.99874 * 16 14 12 19 19 H 1.48501 * 109.47200 * 329.99506 * 16 14 12 20 20 H 1.09000 * 109.47032 * 205.68634 * 1 2 3 21 21 H 1.08993 * 109.47095 * 325.69259 * 1 2 3 22 22 H 1.08998 * 109.46620 * 85.68832 * 1 2 3 23 23 H 1.08998 * 117.49914 * 359.97438 * 4 2 1 24 24 H 1.09004 * 117.50034 * 214.98142 * 4 2 1 25 25 H 1.09002 * 109.47153 * 8.60463 * 6 5 4 26 26 H 1.09001 * 109.46832 * 248.60653 * 6 5 4 27 27 H 1.09004 * 109.47261 * 128.60635 * 6 5 4 28 28 H 1.09000 * 109.47550 * 231.25677 * 7 5 4 29 29 H 1.09001 * 109.46897 * 351.25667 * 7 5 4 30 30 H 1.00903 * 110.99921 * 56.04213 * 8 7 5 31 31 H 1.09005 * 109.46943 * 299.99769 * 9 8 7 32 32 H 1.08997 * 109.47278 * 59.99593 * 9 8 7 33 33 H 1.09000 * 109.47054 * 300.00243 * 10 9 8 34 34 H 1.09007 * 109.47168 * 59.99610 * 10 9 8 35 35 H 1.09005 * 109.47139 * 299.99894 * 11 10 9 36 36 H 1.08997 * 109.47040 * 59.99692 * 11 10 9 37 37 H 0.97006 * 119.99753 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 6 1.3589 -2.1562 -1.4715 7 6 3.5492 -0.7764 -1.4715 8 7 4.0728 -1.9735 -2.1429 9 6 5.3359 -1.6799 -2.8330 10 6 5.8487 -2.9476 -3.5193 11 6 7.1640 -2.6417 -4.2386 12 6 7.6694 -3.8905 -4.9140 13 1 7.1084 -4.8102 -4.8381 14 6 8.8475 -3.8585 -5.6296 15 7 9.2882 -4.9482 -6.2194 16 14 9.8174 -2.2676 -5.7614 17 1 10.7864 -2.1842 -4.6393 18 1 10.5512 -2.2408 -7.0523 19 1 8.8856 -1.1131 -5.6977 20 1 -0.3633 -0.9261 0.4454 21 1 -0.3633 0.8488 0.5792 22 1 -0.3632 0.0773 -1.0248 23 1 1.6112 -1.8583 1.2686 24 1 3.1715 -0.8752 1.2683 25 1 0.7297 -2.6604 -0.7380 26 1 1.9923 -2.8887 -1.9717 27 1 0.7294 -1.6568 -2.2081 28 1 3.3702 0.0053 -2.2098 29 1 4.2748 -0.4244 -0.7382 30 1 3.3920 -2.3568 -2.7815 31 1 5.1696 -0.9044 -3.5808 32 1 6.0737 -1.3344 -2.1090 33 1 6.0148 -3.7235 -2.7719 34 1 5.1107 -3.2927 -4.2434 35 1 6.9974 -1.8660 -4.9861 36 1 7.9021 -2.2963 -3.5148 37 1 10.1173 -4.9259 -6.7226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707703085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = 1.158840 kcal Electronic energy + Delta-G solvation = -13661.781938 eV Core-core repulsion = 11438.945174 eV Total energy + Delta-G solvation = -2222.836764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04637 -36.01286 -33.39868 -31.52097 -29.42408 -28.09706 -27.05350 -24.53582 -22.02102 -21.08809 -20.11212 -18.59743 -16.75063 -15.98845 -15.38437 -14.83979 -14.16150 -13.99191 -13.78198 -13.42818 -12.96328 -12.86922 -12.53218 -12.15585 -12.03761 -11.81205 -11.62838 -11.46548 -11.02734 -10.90169 -10.76822 -10.04094 -9.89161 -9.76823 -9.61867 -9.45789 -9.13773 -8.50662 -8.17107 -6.01063 -3.98591 3.32874 3.39790 3.43772 3.57116 4.27985 4.48058 4.63888 4.69305 4.79620 5.05438 5.12225 5.32853 5.36490 5.51632 5.57802 5.65435 5.71108 5.75132 5.79901 5.80525 5.80891 5.91024 6.05814 6.11280 6.20779 6.29958 6.58801 6.61058 6.95632 7.26315 7.38371 7.47817 7.61143 7.83807 8.58525 9.04655 9.61677 11.12574 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.072708 B = 0.004526 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.009168 B = 6184.473718 C = 6383.853286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 H 0.100 0.900 4 C -0.165 4.165 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.095 3.905 8 N -0.688 5.688 9 C 0.056 3.944 10 C -0.099 4.099 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 10.375 11.396 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 H 0.118 0.882 4 C -0.202 4.202 5 C -0.116 4.116 6 C -0.175 4.175 7 C -0.034 4.034 8 N -0.321 5.321 9 C -0.073 4.073 10 C -0.137 4.137 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.389 10.062 11.839 21.869 hybrid contribution 0.402 1.317 -0.854 1.620 sum -14.987 11.379 10.985 21.790 Atomic orbital electron populations 1.21309 0.92994 1.01652 1.01651 1.22459 0.95170 0.94486 1.05391 0.88194 1.23239 1.02181 1.00879 0.93879 1.21533 0.97061 0.99438 0.93565 1.21329 0.98460 0.97703 1.00053 1.21422 0.93374 0.91538 0.97116 1.60600 1.06630 1.29137 1.35728 1.22154 0.90650 0.98448 0.96042 1.21442 0.98327 0.95412 0.98550 1.19545 0.92783 0.97574 0.95205 1.21163 1.07265 0.96152 1.31058 0.91019 1.25048 0.97331 0.96156 0.95104 1.69923 1.22216 1.27704 1.34592 0.86758 0.80300 0.84671 0.77418 1.20297 1.21434 1.19111 0.92564 0.92486 0.92325 0.88993 0.88957 0.92558 0.90724 0.92683 0.95328 0.91133 0.84047 0.95878 0.91575 0.91933 0.93067 0.96867 0.97060 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.21 37.16 0.34 -0.59 16 2 C -0.16 -1.46 6.13 -90.62 -0.56 -2.01 16 3 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.16 -1.65 9.47 -26.73 -0.25 -1.90 16 5 C -0.12 -1.25 2.57 -154.51 -0.40 -1.64 16 6 C -0.12 -1.20 8.56 37.16 0.32 -0.88 16 7 C 0.09 1.19 5.87 -3.82 -0.02 1.16 16 8 N -0.69 -10.05 6.12 -113.78 -0.70 -10.74 16 9 C 0.06 0.94 5.69 -3.83 -0.02 0.92 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 11 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 12 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 13 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 16 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 20 H 0.06 0.43 7.78 -51.93 -0.40 0.02 16 21 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.45 8.02 -51.93 -0.42 0.04 16 23 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 24 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 25 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 26 H 0.07 0.82 5.83 -51.93 -0.30 0.52 16 27 H 0.05 0.51 8.02 -51.93 -0.42 0.10 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 30 H 0.34 4.66 6.54 -39.29 -0.26 4.41 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -30.60 296.29 -8.16 -38.76 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.75 Total: -1.05 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -1.28 Total: -21.23 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.08 Total: -38.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.60 -8.16 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.915 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds