Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56377 * 2 1 4 4 C 1.53001 * 117.49936 * 145.69104 * 2 1 3 5 5 C 1.52998 * 60.00347 * 107.48999 * 4 2 1 6 6 C 1.52997 * 117.50034 * 252.51286 * 5 4 2 7 7 C 1.53000 * 117.50037 * 107.50977 * 5 4 2 8 8 N 1.46900 * 109.47173 * 111.25576 * 7 5 4 9 9 C 1.46894 * 111.00279 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47423 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47466 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99997 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99811 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99673 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00065 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47239 * 89.99609 * 16 14 12 18 18 H 1.48510 * 109.46923 * 209.99874 * 16 14 12 19 19 H 1.48501 * 109.47200 * 329.99506 * 16 14 12 20 20 H 1.09000 * 109.47032 * 205.68634 * 1 2 3 21 21 H 1.08993 * 109.47095 * 325.69259 * 1 2 3 22 22 H 1.08998 * 109.46620 * 85.68832 * 1 2 3 23 23 H 1.08998 * 117.49914 * 359.97438 * 4 2 1 24 24 H 1.09004 * 117.50034 * 214.98142 * 4 2 1 25 25 H 1.09002 * 109.47153 * 8.60463 * 6 5 4 26 26 H 1.09001 * 109.46832 * 248.60653 * 6 5 4 27 27 H 1.09004 * 109.47261 * 128.60635 * 6 5 4 28 28 H 1.09000 * 109.47550 * 231.25677 * 7 5 4 29 29 H 1.09001 * 109.46897 * 351.25667 * 7 5 4 30 30 H 1.00903 * 110.99921 * 56.04213 * 8 7 5 31 31 H 1.09005 * 109.46943 * 299.99769 * 9 8 7 32 32 H 1.08997 * 109.47278 * 59.99593 * 9 8 7 33 33 H 1.09000 * 109.47054 * 300.00243 * 10 9 8 34 34 H 1.09007 * 109.47168 * 59.99610 * 10 9 8 35 35 H 1.09005 * 109.47139 * 299.99894 * 11 10 9 36 36 H 1.08997 * 109.47040 * 59.99692 * 11 10 9 37 37 H 0.97006 * 119.99753 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 6 1.3589 -2.1562 -1.4715 7 6 3.5492 -0.7764 -1.4715 8 7 4.0728 -1.9735 -2.1429 9 6 5.3359 -1.6799 -2.8330 10 6 5.8487 -2.9476 -3.5193 11 6 7.1640 -2.6417 -4.2386 12 6 7.6694 -3.8905 -4.9140 13 1 7.1084 -4.8102 -4.8381 14 6 8.8475 -3.8585 -5.6296 15 7 9.2882 -4.9482 -6.2194 16 14 9.8174 -2.2676 -5.7614 17 1 10.7864 -2.1842 -4.6393 18 1 10.5512 -2.2408 -7.0523 19 1 8.8856 -1.1131 -5.6977 20 1 -0.3633 -0.9261 0.4454 21 1 -0.3633 0.8488 0.5792 22 1 -0.3632 0.0773 -1.0248 23 1 1.6112 -1.8583 1.2686 24 1 3.1715 -0.8752 1.2683 25 1 0.7297 -2.6604 -0.7380 26 1 1.9923 -2.8887 -1.9717 27 1 0.7294 -1.6568 -2.2081 28 1 3.3702 0.0053 -2.2098 29 1 4.2748 -0.4244 -0.7382 30 1 3.3920 -2.3568 -2.7815 31 1 5.1696 -0.9044 -3.5808 32 1 6.0737 -1.3344 -2.1090 33 1 6.0148 -3.7235 -2.7719 34 1 5.1107 -3.2927 -4.2434 35 1 6.9974 -1.8660 -4.9861 36 1 7.9021 -2.2963 -3.5148 37 1 10.1173 -4.9259 -6.7226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707703085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -17.467942 kcal Electronic energy + Delta-G solvation = -13662.589655 eV Core-core repulsion = 11438.945174 eV Total energy + Delta-G solvation = -2223.644481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88139 -37.35166 -35.28782 -33.36368 -30.44381 -28.85062 -28.54658 -25.89665 -23.60589 -21.99786 -21.74463 -19.44366 -18.89713 -17.15030 -16.44955 -16.40432 -15.68515 -15.33987 -14.79407 -14.69164 -14.29859 -14.03988 -13.70871 -13.48137 -13.23879 -12.94794 -12.80959 -12.60705 -12.41459 -12.26860 -11.90468 -11.78552 -11.56364 -11.48127 -11.29898 -10.76630 -10.67559 -10.39928 -9.31551 -8.29624 -6.34037 1.36001 1.37931 1.50190 2.36475 2.77390 3.05518 3.26325 3.81204 3.88033 4.00019 4.19071 4.21186 4.32663 4.46729 4.60112 4.65826 4.67126 4.86820 4.92602 4.94880 4.96472 4.98841 5.03914 5.07805 5.10829 5.17503 5.26425 5.40606 5.50630 5.53623 5.60621 5.66032 6.10399 6.29607 6.47079 6.74254 7.30534 8.87479 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.072708 B = 0.004526 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.009168 B = 6184.473718 C = 6383.853286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.129 4.129 6 C -0.116 4.116 7 C 0.097 3.903 8 N -0.694 5.694 9 C 0.068 3.932 10 C -0.091 4.091 11 C -0.010 4.010 12 C -0.535 4.535 13 H 0.029 0.971 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.246 1.246 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.344 0.656 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 12.750 12.202 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.164 4.164 3 H 0.122 0.878 4 C -0.206 4.206 5 C -0.130 4.130 6 C -0.173 4.173 7 C -0.032 4.032 8 N -0.327 5.327 9 C -0.061 4.061 10 C -0.129 4.129 11 C -0.048 4.048 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.169 1.169 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.059 12.440 12.661 23.937 hybrid contribution 0.548 0.475 -1.090 1.309 sum -15.512 12.916 11.571 23.266 Atomic orbital electron populations 1.21330 0.91812 1.02325 1.02074 1.22541 0.96045 0.94129 1.03651 0.87840 1.23296 1.02423 1.01543 0.93333 1.21523 0.96718 1.00794 0.93935 1.21303 0.98329 0.97371 1.00309 1.21436 0.94155 0.90630 0.97011 1.60543 1.06143 1.30420 1.35586 1.21892 0.91792 0.96265 0.96119 1.21267 0.96576 0.97011 0.98036 1.19492 0.94687 0.95253 0.95386 1.21526 1.07309 0.96695 1.31745 0.95247 1.26088 0.98606 1.00366 0.94525 1.70081 1.23076 1.30512 1.35726 0.85582 0.78849 0.79906 0.77833 1.19087 1.20866 1.16931 0.92328 0.91361 0.92082 0.88439 0.89227 0.91828 0.91970 0.91940 0.94962 0.91326 0.83528 0.95137 0.91323 0.93302 0.93468 0.96150 0.96282 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.21 71.98 0.66 -0.90 16 2 C -0.14 -2.37 6.13 -10.79 -0.07 -2.44 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.17 -3.08 9.47 30.59 0.29 -2.79 16 5 C -0.13 -2.55 2.57 -52.18 -0.13 -2.69 16 6 C -0.12 -2.16 8.56 71.98 0.62 -1.54 16 7 C 0.10 2.24 5.87 86.30 0.51 2.75 16 8 N -0.69 -19.29 6.12 -513.89 -3.14 -22.43 16 9 C 0.07 2.19 5.69 86.30 0.49 2.68 16 10 C -0.09 -3.67 5.41 30.59 0.17 -3.50 16 11 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 12 C -0.53 -31.88 9.66 25.60 0.25 -31.63 16 13 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 14 C 0.00 0.03 5.47 84.66 0.46 0.49 16 15 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 16 Si 0.96 45.00 27.47 68.60 1.88 46.89 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 20 H 0.06 0.75 7.78 -2.39 -0.02 0.73 16 21 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.06 0.79 8.02 -2.39 -0.02 0.77 16 23 H 0.10 1.65 7.96 -2.39 -0.02 1.63 16 24 H 0.09 1.67 8.05 -2.38 -0.02 1.65 16 25 H 0.06 1.07 7.78 -2.39 -0.02 1.05 16 26 H 0.06 1.31 5.83 -2.39 -0.01 1.29 16 27 H 0.06 1.05 8.02 -2.38 -0.02 1.03 16 28 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.61 7.90 -2.39 -0.02 1.59 16 30 H 0.34 9.07 6.54 -89.69 -0.59 8.48 16 31 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 36 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 37 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -65.66 296.29 2.77 -62.89 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.37 Total: 13.44 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.36 Total: -39.95 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.84 Total: -83.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -65.66 2.77 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707703085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.421 kcal (2) G-P(sol) polarization free energy of solvation -65.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds