Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47344 * 2 1 4 4 C 1.53003 * 109.47352 * 240.00153 * 2 1 3 5 5 C 1.50693 * 109.47473 * 174.99708 * 4 2 1 6 6 H 1.08002 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47333 * 59.99627 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46998 * 300.00113 * 9 7 5 13 13 N 1.46903 * 109.47597 * 119.99951 * 2 1 3 14 14 C 1.48565 * 110.99856 * 48.29678 * 13 2 1 15 15 C 1.54376 * 104.59424 * 200.96384 * 14 13 2 16 16 H 1.08999 * 110.32303 * 264.95551 * 15 14 13 17 17 C 1.53002 * 110.40887 * 142.79230 * 15 14 13 18 18 C 1.54259 * 105.05969 * 23.85131 * 15 14 13 19 19 C 1.48563 * 110.99784 * 292.87969 * 13 2 1 20 20 H 1.08998 * 110.51187 * 40.20848 * 19 13 2 21 21 C 1.52995 * 110.40871 * 277.81607 * 19 13 2 22 22 H 1.09001 * 109.46989 * 172.46787 * 1 2 3 23 23 H 1.08997 * 109.46933 * 292.46397 * 1 2 3 24 24 H 1.08997 * 109.47079 * 52.47106 * 1 2 3 25 25 H 1.09000 * 109.46943 * 294.99820 * 4 2 1 26 26 H 1.08998 * 109.47117 * 54.99785 * 4 2 1 27 27 H 0.97003 * 119.99645 * 179.97438 * 8 7 5 28 28 H 1.08997 * 110.41290 * 82.17782 * 14 13 2 29 29 H 1.09005 * 110.50464 * 319.78950 * 14 13 2 30 30 H 1.08994 * 109.47165 * 304.30572 * 17 15 14 31 31 H 1.08996 * 109.47138 * 64.31620 * 17 15 14 32 32 H 1.09004 * 109.46545 * 184.31529 * 17 15 14 33 33 H 1.08999 * 110.32395 * 241.10527 * 18 15 14 34 34 H 1.08996 * 110.32247 * 118.90057 * 18 15 14 35 35 H 1.09004 * 109.47214 * 303.37424 * 21 19 13 36 36 H 1.09000 * 109.47191 * 183.37628 * 21 19 13 37 37 H 1.08997 * 109.47456 * 63.37303 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0921 -1.0613 -2.4368 10 1 6.6839 -1.6882 -1.2276 11 1 6.5871 -1.7611 -3.6493 12 1 6.4854 0.3695 -2.4952 13 7 2.0198 -0.6925 1.1994 14 6 1.3273 -1.9940 1.3828 15 6 1.5176 -2.3287 2.8778 16 1 2.3826 -2.9779 3.0133 17 6 0.2604 -2.9957 3.4394 18 6 1.7554 -0.9686 3.5658 19 6 1.6888 0.0733 2.4287 20 1 0.6862 0.4950 2.3577 21 6 2.7176 1.1819 2.6598 22 1 -0.3633 -1.0188 -0.1347 23 1 -0.3633 0.3927 0.9497 24 1 -0.3633 0.6260 -0.8150 25 1 1.7517 -1.7715 -1.2056 26 1 1.6054 -0.2617 -2.1370 27 1 4.0607 -2.2429 -4.0359 28 1 1.7880 -2.7608 0.7599 29 1 0.2675 -1.8993 1.1463 30 1 -0.6017 -2.3525 3.2634 31 1 0.1057 -3.9544 2.9443 32 1 0.3817 -3.1555 4.5108 33 1 2.7372 -0.9503 4.0390 34 1 0.9756 -0.7755 4.3024 35 1 3.7155 0.7464 2.7125 36 1 2.4952 1.6948 3.5955 37 1 2.6753 1.8944 1.8360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709963974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -12.307999 kcal Electronic energy + Delta-G solvation = -14961.652353 eV Core-core repulsion = 12738.231624 eV Total energy + Delta-G solvation = -2223.420730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.23498 -34.66167 -32.50486 -31.72287 -28.95706 -27.29665 -26.32340 -24.71584 -23.10278 -20.80748 -19.50367 -18.44691 -16.10682 -15.55873 -15.18363 -14.40382 -14.01981 -13.54728 -13.12153 -12.90184 -12.47372 -12.29950 -12.05530 -11.89902 -11.66055 -11.24397 -11.17795 -10.95784 -10.78096 -10.56583 -10.38417 -10.35352 -10.17741 -9.97037 -9.79170 -9.11534 -8.95467 -8.21308 -7.50720 -5.84061 -3.81465 3.43862 3.47174 3.51228 4.59642 4.64466 4.96885 5.04593 5.28705 5.43443 5.53245 5.61864 5.70220 5.82117 5.88336 5.93562 5.94506 5.97682 6.06541 6.09844 6.14472 6.20434 6.35281 6.39007 6.54201 6.60027 6.67464 6.69419 6.81731 7.07208 7.56276 7.68707 7.89234 8.07593 8.17747 8.64019 9.24131 9.79741 11.28039 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.009069 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.722264 B = 3086.768767 C = 3160.240864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.475 5.475 14 C 0.035 3.965 15 C -0.100 4.100 16 H 0.075 0.925 17 C -0.141 4.141 18 C -0.113 4.113 19 C 0.048 3.952 20 H 0.045 0.955 21 C -0.133 4.133 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 1.439 12.306 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.198 5.198 14 C -0.093 4.093 15 C -0.119 4.119 16 H 0.093 0.907 17 C -0.199 4.199 18 C -0.151 4.151 19 C -0.061 4.061 20 H 0.063 0.937 21 C -0.190 4.190 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.265 1.289 12.057 13.219 hybrid contribution 0.128 0.117 -0.137 0.221 sum -5.137 1.406 11.920 13.056 Atomic orbital electron populations 1.22536 0.99934 1.01536 1.00389 1.22039 0.90032 0.98619 0.92668 0.91300 1.19114 0.96289 0.95239 0.89690 1.21139 0.91846 1.32861 1.06838 0.92237 1.25005 0.97961 0.95945 0.96031 1.69958 1.35248 1.37049 1.12356 0.86698 0.86469 0.77956 0.77049 1.20386 1.21685 1.20541 1.65612 1.52113 1.01746 1.00366 1.23202 0.97355 0.93983 0.94767 1.21891 0.97959 0.96505 0.95522 0.90687 1.21843 0.97425 1.00426 1.00163 1.22407 1.01322 0.94403 0.96988 1.22677 0.97083 0.94623 0.91680 0.93728 1.21668 0.99654 0.97595 1.00112 0.92564 0.93944 0.92699 0.96507 0.96539 0.93334 0.90000 0.93657 0.93058 0.92734 0.93030 0.91462 0.92247 0.91880 0.93437 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.17 37.16 0.30 -2.98 16 2 C 0.07 1.57 2.23 -67.71 -0.15 1.42 16 3 H 0.07 1.48 7.27 -51.93 -0.38 1.10 16 4 C 0.03 0.88 4.46 -27.88 -0.12 0.76 16 5 C -0.49 -13.99 8.84 -34.44 -0.30 -14.29 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.75 13.29 55.43 0.74 -27.01 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 N -0.48 -9.31 4.74 -214.24 -1.02 -10.33 16 14 C 0.03 0.62 5.08 -2.18 -0.01 0.61 16 15 C -0.10 -1.46 3.65 -89.24 -0.33 -1.78 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.14 -1.68 8.92 37.16 0.33 -1.35 16 18 C -0.11 -1.58 6.20 -25.35 -0.16 -1.74 16 19 C 0.05 0.77 2.75 -66.07 -0.18 0.59 16 20 H 0.04 0.70 5.98 -51.93 -0.31 0.39 16 21 C -0.13 -2.01 9.31 37.16 0.35 -1.67 16 22 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 23 H 0.04 0.67 6.11 -51.93 -0.32 0.35 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.02 0.46 7.14 -51.93 -0.37 0.09 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.08 1.66 7.67 -51.93 -0.40 1.26 16 29 H 0.05 0.78 5.08 -51.93 -0.26 0.52 16 30 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -30.11 283.69 -7.88 -37.99 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.48 Total: -3.30 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.37 Total: -19.07 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.28 Total: -37.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.11 -7.88 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.683 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds