Wall clock time and date at job start Mon Mar 30 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47033 * 2 1 4 4 C 1.52996 * 109.46809 * 239.99988 * 2 1 3 5 5 C 1.50704 * 109.47182 * 64.24557 * 4 2 1 6 6 H 1.08000 * 119.99368 * 5.09926 * 5 4 2 7 7 C 1.37869 * 120.00387 * 185.09595 * 5 4 2 8 8 N 1.31511 * 120.00485 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47134 * 89.99184 * 9 7 5 11 11 H 1.48495 * 109.47388 * 210.00092 * 9 7 5 12 12 H 1.48508 * 109.46899 * 329.99661 * 9 7 5 13 13 N 1.46900 * 109.47200 * 120.00247 * 2 1 3 14 14 C 1.47442 * 111.00319 * 185.11704 * 13 2 1 15 15 C 1.54311 * 107.23688 * 123.25783 * 14 13 2 16 16 H 1.09008 * 110.70756 * 263.90761 * 15 14 13 17 17 C 1.52997 * 110.71126 * 140.66699 * 15 14 13 18 18 C 1.55151 * 103.01676 * 22.28508 * 15 14 13 19 19 C 1.47843 * 111.00236 * 305.96416 * 13 2 1 20 20 H 1.09002 * 110.36850 * 332.46164 * 19 13 2 21 21 C 1.53000 * 110.37646 * 94.69081 * 19 13 2 22 22 H 1.09009 * 109.46778 * 299.99848 * 1 2 3 23 23 H 1.08993 * 109.46913 * 59.99458 * 1 2 3 24 24 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47166 * 184.23917 * 4 2 1 26 26 H 1.08989 * 109.47550 * 304.24210 * 4 2 1 27 27 H 0.97000 * 120.00250 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.89114 * 242.67073 * 14 13 2 29 29 H 1.09002 * 109.88487 * 3.69043 * 14 13 2 30 30 H 1.08998 * 109.46573 * 61.45421 * 17 15 14 31 31 H 1.08993 * 109.47314 * 181.45250 * 17 15 14 32 32 H 1.09001 * 109.46981 * 301.46259 * 17 15 14 33 33 H 1.08999 * 110.98915 * 206.25641 * 18 15 14 34 34 H 1.08998 * 110.98816 * 82.43642 * 18 15 14 35 35 H 1.09003 * 109.46703 * 58.45188 * 21 19 13 36 36 H 1.08999 * 109.47045 * 178.45041 * 21 19 13 37 37 H 1.08992 * 109.47122 * 298.44697 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6253 0.0473 -2.4775 6 1 1.1273 1.0002 -2.3755 7 6 1.8816 -0.4660 -3.7311 8 7 1.5193 0.2045 -4.8029 9 14 2.7423 -2.1145 -3.9074 10 1 1.7298 -3.2003 -3.9418 11 1 3.5284 -2.1304 -5.1671 12 1 3.6530 -2.3234 -2.7530 13 7 2.0197 -0.6925 1.1994 14 6 3.4884 -0.6068 1.2965 15 6 3.8198 0.0382 2.6586 16 1 3.9830 1.1103 2.5478 17 6 5.0393 -0.6334 3.2930 18 6 2.5434 -0.2386 3.4961 19 6 1.4321 -0.1100 2.4246 20 1 1.1801 0.9381 2.2632 21 6 0.1894 -0.8970 2.8456 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1273 -0.7875 -1.2121 26 1 1.6159 -1.7245 -1.2881 27 1 1.7000 -0.1565 -5.6849 28 1 3.9225 -1.6053 1.2436 29 1 3.8782 0.0100 0.4867 30 1 5.9054 -0.5007 2.6446 31 1 5.2395 -0.1804 4.2639 32 1 4.8418 -1.6976 3.4222 33 1 2.4199 0.5100 4.2786 34 1 2.5640 -1.2432 3.9186 35 1 0.4596 -1.9393 3.0151 36 1 -0.2155 -0.4725 3.7643 37 1 -0.5612 -0.8397 2.0574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709963976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:49 Heat of formation + Delta-G solvation = -14.225574 kcal Electronic energy + Delta-G solvation = -14812.979165 eV Core-core repulsion = 12589.475284 eV Total energy + Delta-G solvation = -2223.503882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.30348 -34.84587 -32.70957 -31.70810 -29.80081 -27.63399 -26.24256 -24.59189 -23.02727 -20.15376 -20.01336 -18.91443 -16.93935 -15.81194 -14.87481 -14.44756 -14.09093 -13.66500 -13.24355 -12.89288 -12.64293 -12.61264 -12.03036 -11.96136 -11.84583 -11.52596 -11.38430 -10.88372 -10.81631 -10.73994 -10.52515 -10.38285 -10.20281 -9.96961 -9.74641 -9.41879 -9.11531 -8.49254 -7.72163 -6.01057 -3.98170 3.34964 3.41846 3.47898 4.41357 4.49579 4.75066 4.87250 5.02754 5.33591 5.47690 5.50257 5.59634 5.67411 5.76139 5.79408 5.91585 5.99613 6.04366 6.07861 6.09516 6.15189 6.24925 6.29899 6.40217 6.50114 6.53784 6.72910 6.86976 7.08457 7.23903 7.40646 7.64384 7.72972 7.94745 8.57440 9.03241 9.62120 11.12191 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.008851 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.206062 B = 3162.621652 C = 3611.784939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.032 0.968 4 C -0.001 4.001 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.526 5.526 14 C 0.048 3.952 15 C -0.117 4.117 16 H 0.071 0.929 17 C -0.137 4.137 18 C -0.119 4.119 19 C 0.068 3.932 20 H 0.049 0.951 21 C -0.141 4.141 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.013 0.987 26 H 0.020 0.980 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -1.647 16.012 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.050 0.950 4 C -0.039 4.039 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.251 5.251 14 C -0.080 4.080 15 C -0.137 4.137 16 H 0.089 0.911 17 C -0.195 4.195 18 C -0.157 4.157 19 C -0.040 4.040 20 H 0.067 0.933 21 C -0.199 4.199 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.384 -2.171 15.751 16.078 hybrid contribution 0.706 0.042 -0.293 0.766 sum 3.090 -2.129 15.458 15.907 Atomic orbital electron populations 1.21924 0.95127 1.01536 1.00670 1.21770 0.95208 0.95026 0.89696 0.95037 1.19593 0.95860 0.96236 0.92178 1.21104 1.38557 1.06701 0.89055 0.91022 1.24984 0.95277 0.97262 0.95856 1.69912 1.47828 1.38795 0.97885 0.86781 0.80328 0.84767 0.77441 1.20296 1.21580 1.19020 1.63629 1.04800 1.54660 1.01973 1.22844 0.89145 1.00457 0.95544 1.22406 0.95221 0.99900 0.96127 0.91068 1.21706 0.97290 1.00514 1.00000 1.22819 0.94135 1.01689 0.97077 1.22470 0.94764 0.96746 0.90055 0.93281 1.21922 0.97264 1.00240 1.00451 0.94321 0.91200 0.92716 0.96888 0.96205 0.92813 0.91134 0.92198 0.92668 0.93013 0.92483 0.91688 0.90882 0.92427 0.93387 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.58 37.16 0.28 -2.34 16 2 C 0.09 1.88 1.67 -67.71 -0.11 1.77 16 3 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 4 C 0.00 -0.02 3.54 -27.88 -0.10 -0.12 16 5 C -0.52 -14.75 8.85 -34.44 -0.30 -15.06 16 6 H 0.07 2.19 7.45 -52.49 -0.39 1.80 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 9 Si 0.88 22.27 27.37 -169.99 -4.65 17.61 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.53 6.69 56.52 0.38 -6.16 16 13 N -0.53 -9.43 4.70 -215.48 -1.01 -10.44 16 14 C 0.05 0.80 5.71 -2.84 -0.02 0.78 16 15 C -0.12 -1.54 3.54 -88.80 -0.31 -1.86 16 16 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 17 C -0.14 -1.50 9.13 37.16 0.34 -1.17 16 18 C -0.12 -1.49 5.94 -24.59 -0.15 -1.64 16 19 C 0.07 1.01 2.39 -66.19 -0.16 0.85 16 20 H 0.05 0.76 7.32 -51.93 -0.38 0.38 16 21 C -0.14 -1.89 9.13 37.16 0.34 -1.55 16 22 H 0.04 0.64 5.58 -51.92 -0.29 0.35 16 23 H 0.07 1.48 7.01 -51.93 -0.36 1.12 16 24 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 25 H 0.01 0.32 6.13 -51.93 -0.32 0.00 16 26 H 0.02 0.50 7.29 -51.94 -0.38 0.12 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.07 1.16 7.82 -51.93 -0.41 0.75 16 29 H 0.06 1.09 6.69 -51.93 -0.35 0.74 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.89 7.96 -51.93 -0.41 0.47 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.96 5.22 -51.93 -0.27 0.69 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -30.12 279.48 -7.47 -37.58 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.50 Total: -3.17 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -0.29 Total: -18.45 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.24 Total: -37.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.65 Total: 17.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.12 -7.47 -37.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.359 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds