Wall clock time and date at job start Mon Mar 30 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47033 * 2 1 4 4 C 1.52996 * 109.46809 * 239.99988 * 2 1 3 5 5 C 1.50704 * 109.47182 * 64.24557 * 4 2 1 6 6 H 1.08000 * 119.99368 * 5.09926 * 5 4 2 7 7 C 1.37869 * 120.00387 * 185.09595 * 5 4 2 8 8 N 1.31511 * 120.00485 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47134 * 89.99184 * 9 7 5 11 11 H 1.48495 * 109.47388 * 210.00092 * 9 7 5 12 12 H 1.48508 * 109.46899 * 329.99661 * 9 7 5 13 13 N 1.46900 * 109.47200 * 120.00247 * 2 1 3 14 14 C 1.47442 * 111.00319 * 185.11704 * 13 2 1 15 15 C 1.54311 * 107.23688 * 123.25783 * 14 13 2 16 16 H 1.09008 * 110.70756 * 263.90761 * 15 14 13 17 17 C 1.52997 * 110.71126 * 140.66699 * 15 14 13 18 18 C 1.55151 * 103.01676 * 22.28508 * 15 14 13 19 19 C 1.47843 * 111.00236 * 305.96416 * 13 2 1 20 20 H 1.09002 * 110.36850 * 332.46164 * 19 13 2 21 21 C 1.53000 * 110.37646 * 94.69081 * 19 13 2 22 22 H 1.09009 * 109.46778 * 299.99848 * 1 2 3 23 23 H 1.08993 * 109.46913 * 59.99458 * 1 2 3 24 24 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47166 * 184.23917 * 4 2 1 26 26 H 1.08989 * 109.47550 * 304.24210 * 4 2 1 27 27 H 0.97000 * 120.00250 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.89114 * 242.67073 * 14 13 2 29 29 H 1.09002 * 109.88487 * 3.69043 * 14 13 2 30 30 H 1.08998 * 109.46573 * 61.45421 * 17 15 14 31 31 H 1.08993 * 109.47314 * 181.45250 * 17 15 14 32 32 H 1.09001 * 109.46981 * 301.46259 * 17 15 14 33 33 H 1.08999 * 110.98915 * 206.25641 * 18 15 14 34 34 H 1.08998 * 110.98816 * 82.43642 * 18 15 14 35 35 H 1.09003 * 109.46703 * 58.45188 * 21 19 13 36 36 H 1.08999 * 109.47045 * 178.45041 * 21 19 13 37 37 H 1.08992 * 109.47122 * 298.44697 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6253 0.0473 -2.4775 6 1 1.1273 1.0002 -2.3755 7 6 1.8816 -0.4660 -3.7311 8 7 1.5193 0.2045 -4.8029 9 14 2.7423 -2.1145 -3.9074 10 1 1.7298 -3.2003 -3.9418 11 1 3.5284 -2.1304 -5.1671 12 1 3.6530 -2.3234 -2.7530 13 7 2.0197 -0.6925 1.1994 14 6 3.4884 -0.6068 1.2965 15 6 3.8198 0.0382 2.6586 16 1 3.9830 1.1103 2.5478 17 6 5.0393 -0.6334 3.2930 18 6 2.5434 -0.2386 3.4961 19 6 1.4321 -0.1100 2.4246 20 1 1.1801 0.9381 2.2632 21 6 0.1894 -0.8970 2.8456 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1273 -0.7875 -1.2121 26 1 1.6159 -1.7245 -1.2881 27 1 1.7000 -0.1565 -5.6849 28 1 3.9225 -1.6053 1.2436 29 1 3.8782 0.0100 0.4867 30 1 5.9054 -0.5007 2.6446 31 1 5.2395 -0.1804 4.2639 32 1 4.8418 -1.6976 3.4222 33 1 2.4199 0.5100 4.2786 34 1 2.5640 -1.2432 3.9186 35 1 0.4596 -1.9393 3.0151 36 1 -0.2155 -0.4725 3.7643 37 1 -0.5612 -0.8397 2.0574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709963976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:48 Heat of formation + Delta-G solvation = -33.384397 kcal Electronic energy + Delta-G solvation = -14813.809954 eV Core-core repulsion = 12589.475284 eV Total energy + Delta-G solvation = -2224.334671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60361 -36.44303 -34.54681 -33.16515 -31.24366 -29.43923 -27.30889 -25.83196 -24.98682 -21.53810 -21.22399 -20.41667 -19.06650 -17.13067 -16.49537 -16.18604 -15.55999 -15.07968 -14.77766 -14.36204 -14.06000 -13.75966 -13.64374 -13.41158 -13.14811 -12.89873 -12.68187 -12.58606 -12.41412 -12.21704 -11.84284 -11.63861 -11.57920 -11.55259 -11.41097 -11.26752 -11.04130 -10.76031 -9.15768 -8.29916 -6.32470 1.33986 1.34667 1.47892 2.35016 3.05422 3.07698 3.66453 3.78372 3.96710 4.23819 4.31546 4.36728 4.50548 4.54840 4.60710 4.64915 4.76003 4.86206 4.95994 4.97413 5.02890 5.06106 5.11694 5.16177 5.18415 5.27776 5.31515 5.35861 5.48735 5.53110 5.57084 5.64616 6.16231 6.32061 6.36687 6.73920 7.31466 8.86560 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.008851 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.206062 B = 3162.621652 C = 3611.784939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.098 3.902 3 H 0.013 0.987 4 C 0.007 3.993 5 C -0.522 4.522 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.254 1.254 13 N -0.533 5.533 14 C 0.042 3.958 15 C -0.112 4.112 16 H 0.069 0.931 17 C -0.132 4.132 18 C -0.109 4.109 19 C 0.060 3.940 20 H 0.042 0.958 21 C -0.137 4.137 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.010 0.990 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -2.972 18.462 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.010 4.010 3 H 0.031 0.969 4 C -0.031 4.031 5 C -0.560 4.560 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.177 1.177 13 N -0.258 5.258 14 C -0.086 4.086 15 C -0.132 4.132 16 H 0.087 0.913 17 C -0.190 4.190 18 C -0.146 4.146 19 C -0.048 4.048 20 H 0.061 0.939 21 C -0.195 4.195 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.059 -3.494 18.225 18.808 hybrid contribution 0.465 0.541 -1.044 1.264 sum 3.524 -2.954 17.181 17.786 Atomic orbital electron populations 1.21818 0.94177 1.01599 1.00686 1.21497 0.95916 0.93702 0.89871 0.96868 1.19459 0.95530 0.95705 0.92364 1.21365 1.37867 1.05788 0.91011 0.94631 1.25900 0.96146 1.01399 0.95432 1.70051 1.49454 1.40936 0.98583 0.85705 0.79485 0.79798 0.77940 1.19223 1.20808 1.17746 1.63600 1.05789 1.54374 1.01995 1.22911 0.88329 1.00368 0.97011 1.22379 0.96795 0.99692 0.94289 0.91253 1.21671 0.96003 1.00591 1.00735 1.22802 0.92184 1.03055 0.96606 1.22655 0.96253 0.96446 0.89404 0.93943 1.21889 0.96141 1.00235 1.01219 0.91410 0.94047 0.92530 0.97187 0.96489 0.92512 0.91062 0.94730 0.92764 0.91007 0.92177 0.89289 0.89934 0.92392 0.90711 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 7.58 71.98 0.55 -4.34 16 2 C 0.10 4.13 1.67 44.91 0.07 4.20 16 3 H 0.01 0.60 8.10 -2.39 -0.02 0.58 16 4 C 0.01 0.36 3.54 29.85 0.11 0.46 16 5 C -0.52 -30.84 8.85 25.60 0.23 -30.62 16 6 H 0.04 2.29 7.45 -2.91 -0.02 2.27 16 7 C 0.01 0.48 5.47 84.65 0.46 0.94 16 8 N -0.95 -60.51 13.96 21.44 0.30 -60.21 16 9 Si 0.95 46.06 27.37 68.60 1.88 47.94 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.25 -11.74 6.69 99.48 0.67 -11.08 16 13 N -0.53 -18.53 4.70 -835.66 -3.93 -22.46 16 14 C 0.04 1.34 5.71 86.64 0.49 1.84 16 15 C -0.11 -2.69 3.54 -9.61 -0.03 -2.72 16 16 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 17 C -0.13 -2.50 9.13 71.98 0.66 -1.84 16 18 C -0.11 -2.34 5.94 31.98 0.19 -2.15 16 19 C 0.06 1.65 2.39 45.39 0.11 1.76 16 20 H 0.04 1.23 7.32 -2.39 -0.02 1.21 16 21 C -0.14 -3.28 9.13 71.98 0.66 -2.62 16 22 H 0.07 2.20 5.58 -2.38 -0.01 2.19 16 23 H 0.04 1.81 7.01 -2.39 -0.02 1.80 16 24 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 25 H 0.01 0.50 6.13 -2.39 -0.01 0.48 16 26 H 0.02 0.84 7.29 -2.39 -0.02 0.83 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.07 2.25 7.82 -2.39 -0.02 2.24 16 29 H 0.03 1.27 6.69 -2.39 -0.02 1.25 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.66 7.96 -2.39 -0.02 1.64 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.44 5.22 -2.39 -0.01 1.43 16 Total: -1.00 -65.84 279.48 2.70 -63.13 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.97 Total: 6.68 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 3.49 Total: -35.08 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -3.63 Total: -82.67 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -65.84 2.70 -63.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.750 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds