Wall clock time and date at job start Mon Mar 30 2020 03:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47077 * 2 1 4 4 C 1.52993 * 109.47292 * 120.00319 * 2 1 3 5 5 C 1.50699 * 109.47294 * 179.97438 * 4 2 1 6 6 H 1.07999 * 120.00195 * 355.14801 * 5 4 2 7 7 C 1.37878 * 120.00456 * 175.14951 * 5 4 2 8 8 N 1.31518 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00492 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47226 * 59.99173 * 9 7 5 11 11 H 1.48494 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46628 * 299.99890 * 9 7 5 13 13 N 1.46904 * 109.46854 * 240.00416 * 2 1 3 14 14 C 1.48549 * 111.00242 * 76.77086 * 13 2 1 15 15 C 1.54382 * 104.69893 * 200.90106 * 14 13 2 16 16 H 1.09005 * 110.32596 * 265.01894 * 15 14 13 17 17 C 1.53001 * 110.32408 * 142.81201 * 15 14 13 18 18 C 1.54570 * 104.91181 * 23.88166 * 15 14 13 19 19 C 1.48561 * 110.99713 * 321.35083 * 13 2 1 20 20 H 1.09000 * 110.41316 * 40.14849 * 19 13 2 21 21 C 1.53004 * 110.41289 * 277.81948 * 19 13 2 22 22 H 1.08997 * 109.47102 * 307.66945 * 1 2 3 23 23 H 1.08999 * 109.47861 * 67.67298 * 1 2 3 24 24 H 1.09004 * 109.47174 * 187.67470 * 1 2 3 25 25 H 1.08998 * 109.47543 * 299.99122 * 4 2 1 26 26 H 1.08997 * 109.47778 * 59.99563 * 4 2 1 27 27 H 0.97000 * 120.00133 * 180.02562 * 8 7 5 28 28 H 1.08992 * 110.41670 * 319.73604 * 14 13 2 29 29 H 1.09004 * 110.41358 * 82.06564 * 14 13 2 30 30 H 1.08997 * 109.47462 * 61.45152 * 17 15 14 31 31 H 1.09000 * 109.47269 * 181.45295 * 17 15 14 32 32 H 1.09000 * 109.46933 * 301.45170 * 17 15 14 33 33 H 1.09003 * 110.29919 * 241.07943 * 18 15 14 34 34 H 1.09000 * 110.40224 * 118.93860 * 18 15 14 35 35 H 1.09003 * 109.46702 * 75.45206 * 21 19 13 36 36 H 1.09002 * 109.47058 * 195.44417 * 21 19 13 37 37 H 1.08996 * 109.47278 * 315.44657 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5469 -0.7218 1.2488 6 1 4.0869 -0.3246 0.4020 7 6 4.2365 -1.2294 2.3295 8 7 3.5790 -1.7127 3.3610 9 14 6.1045 -1.2294 2.3295 10 1 6.5996 0.1656 2.2110 11 1 6.5996 -1.8240 3.5969 12 1 6.5993 -2.0294 1.1803 13 7 2.0195 -0.6924 -1.1995 14 6 1.8978 0.1729 -2.4008 15 6 1.9186 -0.8072 -3.5934 16 1 2.9302 -0.9012 -3.9886 17 6 0.9612 -0.3325 -4.6883 18 6 1.4423 -2.1562 -3.0080 19 6 1.1757 -1.8740 -1.5138 20 1 0.1229 -1.6436 -1.3506 21 6 1.5969 -3.0726 -0.6611 22 1 -0.3633 0.6280 0.8134 23 1 -0.3635 0.3904 -0.9506 24 1 -0.3634 -1.0185 0.1372 25 1 1.6768 -0.2075 2.1392 26 1 1.6766 -1.7489 1.2492 27 1 4.0640 -2.0694 4.1215 28 1 0.9579 0.7243 -2.3785 29 1 2.7405 0.8618 -2.4601 30 1 1.2809 0.6439 -5.0523 31 1 0.9674 -1.0470 -5.5114 32 1 -0.0471 -0.2561 -4.2811 33 1 2.2202 -2.9118 -3.1178 34 1 0.5265 -2.4822 -3.5011 35 1 1.2335 -2.9392 0.3578 36 1 1.1729 -3.9845 -1.0816 37 1 2.6842 -3.1480 -0.6522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709963978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:52 Heat of formation + Delta-G solvation = -5.597569 kcal Electronic energy + Delta-G solvation = -15066.964370 eV Core-core repulsion = 12843.834627 eV Total energy + Delta-G solvation = -2223.129743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26064 -34.73600 -32.37369 -31.34946 -29.47412 -27.30824 -26.12302 -24.46737 -23.09955 -20.68450 -19.85917 -18.18284 -16.09054 -15.72502 -15.08957 -14.45783 -14.13620 -13.21584 -13.14098 -12.91202 -12.45296 -12.14717 -11.89495 -11.71556 -11.65866 -11.36444 -11.18189 -10.83566 -10.78752 -10.57191 -10.46923 -10.33187 -10.17516 -9.87373 -9.48884 -9.11200 -8.86543 -8.14815 -7.49706 -5.81615 -3.77696 3.44798 3.48263 3.52299 4.61090 4.66256 4.93421 5.05141 5.28840 5.50524 5.55638 5.66355 5.72933 5.75339 5.89036 5.92242 5.98681 6.02783 6.08409 6.09415 6.21541 6.35527 6.39661 6.46282 6.52201 6.60370 6.70163 6.79499 7.08375 7.15973 7.62851 7.71670 7.98275 8.09771 8.21061 8.69143 9.28472 9.82827 11.30594 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.009248 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.373321 B = 3026.898311 C = 3215.716844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 H 0.064 0.936 4 C 0.025 3.975 5 C -0.483 4.483 6 H 0.060 0.940 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.475 5.475 14 C 0.031 3.969 15 C -0.098 4.098 16 H 0.074 0.926 17 C -0.141 4.141 18 C -0.116 4.116 19 C 0.055 3.945 20 H 0.052 0.948 21 C -0.137 4.137 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.017 0.983 26 H 0.029 0.971 27 H 0.256 0.744 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 0.977 -12.172 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.034 4.034 3 H 0.082 0.918 4 C -0.012 4.012 5 C -0.522 4.522 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.548 5.548 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.198 5.198 14 C -0.097 4.097 15 C -0.117 4.117 16 H 0.093 0.907 17 C -0.199 4.199 18 C -0.154 4.154 19 C -0.054 4.054 20 H 0.070 0.930 21 C -0.194 4.194 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.443 0.757 -11.871 13.082 hybrid contribution 0.211 0.280 -0.015 0.351 sum -5.232 1.037 -11.887 13.029 Atomic orbital electron populations 1.22497 0.99737 1.01546 1.00178 1.22024 0.90162 0.98183 0.93009 0.91760 1.19346 0.96408 0.95869 0.89547 1.21136 0.91472 1.37921 1.01650 0.92174 1.24994 0.97777 0.96305 0.95896 1.69954 1.35019 1.42684 1.07097 0.86731 0.86765 0.78032 0.76829 1.20633 1.21747 1.20447 1.65661 1.48611 1.04627 1.00948 1.23170 0.99774 0.95827 0.90922 1.21908 0.99367 0.95353 0.95034 0.90723 1.21842 0.99137 1.00694 0.98180 1.22503 1.00457 0.96969 0.95466 1.22714 0.95818 0.93150 0.93692 0.92984 1.21876 1.03147 0.94500 0.99872 0.92774 0.94207 0.92399 0.96491 0.95329 0.93404 0.94670 0.90984 0.92919 0.92922 0.93004 0.91392 0.92274 0.91337 0.94328 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 7.80 37.15 0.29 -2.90 16 2 C 0.07 1.56 2.30 -67.72 -0.16 1.41 16 3 H 0.06 1.38 7.99 -51.93 -0.41 0.96 16 4 C 0.03 0.64 4.27 -27.89 -0.12 0.53 16 5 C -0.48 -13.68 8.76 -34.44 -0.30 -13.99 16 6 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.56 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.48 -9.28 4.49 -214.25 -0.96 -10.24 16 14 C 0.03 0.51 5.82 -2.19 -0.01 0.50 16 15 C -0.10 -1.36 3.67 -89.07 -0.33 -1.68 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -1.58 8.92 37.16 0.33 -1.24 16 18 C -0.12 -1.69 6.20 -25.18 -0.16 -1.85 16 19 C 0.05 0.95 2.41 -66.07 -0.16 0.79 16 20 H 0.05 0.88 5.22 -51.93 -0.27 0.61 16 21 C -0.14 -2.57 8.50 37.16 0.32 -2.25 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 24 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.76 4.75 -51.93 -0.25 0.51 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.04 0.54 6.35 -51.93 -0.33 0.21 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 35 H 0.07 1.43 5.57 -51.93 -0.29 1.14 16 36 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -29.74 280.58 -7.79 -37.53 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.38 Total: -2.73 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.39 Total: -19.36 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.23 Total: -37.06 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.74 -7.79 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.934 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds