Wall clock time and date at job start Mon Mar 30 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47003 * 2 1 4 4 C 1.53004 * 109.47743 * 120.00137 * 2 1 3 5 5 C 1.50693 * 109.47391 * 185.00081 * 4 2 1 6 6 H 1.07998 * 119.99879 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00185 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00505 * 179.72361 * 7 5 4 9 9 Si 1.86809 * 119.99812 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46709 * 89.99797 * 9 7 5 11 11 H 1.48496 * 109.46981 * 209.99828 * 9 7 5 12 12 H 1.48499 * 109.46782 * 330.00072 * 9 7 5 13 13 N 1.46900 * 109.47255 * 240.00394 * 2 1 3 14 14 C 1.46900 * 110.99743 * 309.07875 * 13 2 1 15 15 C 1.46902 * 111.00253 * 73.03175 * 13 2 1 16 16 C 1.54255 * 110.03497 * 181.34571 * 15 13 2 17 17 C 1.54892 * 104.19857 * 217.10868 * 16 15 13 18 18 C 1.54887 * 102.74581 * 37.93935 * 17 16 15 19 19 C 1.53873 * 110.02917 * 64.17788 * 15 13 2 20 20 H 1.09003 * 109.47087 * 186.34900 * 1 2 3 21 21 H 1.09004 * 109.46774 * 306.34133 * 1 2 3 22 22 H 1.08994 * 109.47574 * 66.34478 * 1 2 3 23 23 H 1.08993 * 109.46620 * 64.99693 * 4 2 1 24 24 H 1.09001 * 109.46931 * 305.00001 * 4 2 1 25 25 H 0.97001 * 120.00391 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.47043 * 65.85233 * 14 13 2 27 27 H 1.09001 * 109.47028 * 185.85036 * 14 13 2 28 28 H 1.09002 * 109.47208 * 305.85477 * 14 13 2 29 29 H 1.09005 * 110.01342 * 302.78989 * 15 13 2 30 30 H 1.09004 * 110.48864 * 335.78670 * 16 15 13 31 31 H 1.08998 * 110.49115 * 98.42504 * 16 15 13 32 32 H 1.09001 * 110.74974 * 279.62840 * 17 16 15 33 33 H 1.09001 * 110.91664 * 156.33445 * 17 16 15 34 34 H 1.09006 * 110.48399 * 203.38085 * 18 17 16 35 35 H 1.08995 * 110.59854 * 80.79833 * 18 17 16 36 36 H 1.09004 * 110.03445 * 238.57169 * 19 15 13 37 37 H 1.09003 * 110.03341 * 359.95166 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0861 0.5391 7 6 4.2305 -1.1926 2.3581 8 7 5.5416 -1.1044 2.4107 9 14 3.3016 -2.1078 3.6958 10 1 3.1711 -3.5379 3.3178 11 1 4.0450 -2.0002 4.9768 12 1 1.9505 -1.5128 3.8559 13 7 2.0196 -0.6924 -1.1995 14 6 1.3800 -2.0066 -1.3466 15 6 1.8178 0.1288 -2.4007 16 6 2.3083 -0.6323 -3.6496 17 6 2.9405 0.4662 -4.5399 18 6 3.6342 1.3871 -3.5056 19 6 2.6608 1.4127 -2.3091 20 1 -0.3633 -1.0214 0.1136 21 1 -0.3633 0.6090 0.8278 22 1 -0.3634 0.4123 -0.9412 23 1 1.7517 -1.7715 1.2055 24 1 1.6055 -0.2618 2.1370 25 1 6.0260 -1.5105 3.1464 26 1 0.3152 -1.8731 -1.5372 27 1 1.8344 -2.5404 -2.1813 28 1 1.5159 -2.5815 -0.4305 29 1 0.7628 0.3815 -2.5069 30 1 3.0553 -1.3766 -3.3739 31 1 1.4701 -1.1037 -4.1628 32 1 2.1707 1.0106 -5.0868 33 1 3.6705 0.0380 -5.2269 34 1 3.7635 2.3896 -3.9137 35 1 4.5960 0.9712 -3.2061 36 1 2.0151 2.2887 -2.3718 37 1 3.2190 1.4270 -1.3730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709966194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:34 Heat of formation + Delta-G solvation = -28.980161 kcal Electronic energy + Delta-G solvation = -14953.966900 eV Core-core repulsion = 12729.823212 eV Total energy + Delta-G solvation = -2224.143689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29997 -37.23945 -34.72330 -32.42048 -29.94291 -29.42635 -28.45207 -26.02002 -24.45877 -21.63177 -21.14351 -19.54138 -18.77969 -17.50289 -16.63317 -16.35546 -15.90849 -14.82857 -14.73741 -14.46312 -14.16384 -14.06929 -13.84009 -13.42816 -12.97301 -12.73456 -12.55893 -12.20917 -12.02178 -11.91633 -11.77911 -11.69907 -11.60641 -11.43210 -11.35916 -11.30269 -11.02199 -10.65776 -8.80649 -8.16329 -6.14735 1.36384 1.37887 1.48994 2.42227 3.11614 3.27220 3.73753 3.84062 4.09410 4.20494 4.36880 4.47384 4.51462 4.61949 4.64710 4.67043 4.72032 4.84504 4.90000 4.95689 5.07651 5.08898 5.12412 5.14197 5.17438 5.24892 5.25550 5.36998 5.48055 5.54940 5.59049 5.77296 6.41437 6.54665 6.61638 6.93466 7.45467 9.01175 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035417 B = 0.009340 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.393520 B = 2997.208316 C = 3348.746354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C -0.003 4.003 5 C -0.486 4.486 6 H 0.034 0.966 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.537 5.537 14 C 0.029 3.971 15 C 0.079 3.921 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.121 4.121 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.016 0.984 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 1.956 -11.503 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 H 0.079 0.921 4 C -0.041 4.041 5 C -0.524 4.524 6 H 0.053 0.947 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.261 5.261 14 C -0.119 4.119 15 C -0.029 4.029 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.159 4.159 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.580 1.832 -11.344 15.620 hybrid contribution -0.444 -0.336 0.968 1.117 sum -11.024 1.496 -10.376 15.213 Atomic orbital electron populations 1.22385 0.96673 1.02140 1.02052 1.21505 0.92197 0.97331 0.90324 0.92087 1.19617 0.94649 0.95768 0.94039 1.21280 0.91958 1.32325 1.06866 0.94744 1.25949 0.95509 0.97680 1.00786 1.70085 1.08381 1.48184 1.33502 0.85761 0.79702 0.79335 0.78402 1.19788 1.21457 1.17184 1.62158 1.58456 1.03495 1.01982 1.22321 0.96621 0.91302 1.01674 1.22364 0.97253 0.93251 0.90066 1.22445 1.00419 0.98058 0.94379 1.22427 0.99788 0.96093 0.96729 1.22286 0.97807 1.00347 0.95342 1.22224 0.98085 0.96846 0.98772 0.92336 0.91916 0.91917 0.96596 0.96392 0.93116 0.94508 0.91279 0.93120 0.93564 0.92455 0.90457 0.89909 0.90781 0.90433 0.93659 0.91076 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.32 8.25 71.98 0.59 -4.73 16 2 C 0.09 3.75 2.01 44.91 0.09 3.84 16 3 H 0.06 2.57 6.36 -2.39 -0.02 2.55 16 4 C 0.00 -0.15 3.49 29.85 0.10 -0.05 16 5 C -0.49 -28.63 9.39 25.60 0.24 -28.39 16 6 H 0.03 2.28 7.99 -2.91 -0.02 2.25 16 7 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 8 N -0.96 -62.32 13.96 21.45 0.30 -62.02 16 9 Si 0.94 45.87 27.47 68.60 1.88 47.76 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 13 N -0.54 -20.29 4.16 -867.57 -3.61 -23.90 16 14 C 0.03 0.95 8.20 127.69 1.05 2.00 16 15 C 0.08 2.41 2.53 45.63 0.12 2.53 16 16 C -0.12 -3.03 5.20 31.67 0.16 -2.86 16 17 C -0.11 -2.52 6.91 31.89 0.22 -2.30 16 18 C -0.12 -3.26 6.83 31.67 0.22 -3.05 16 19 C -0.12 -3.82 5.78 31.32 0.18 -3.64 16 20 H 0.06 1.73 6.85 -2.39 -0.02 1.71 16 21 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.06 1.68 6.57 -2.39 -0.02 1.66 16 23 H 0.02 0.75 5.79 -2.39 -0.01 0.73 16 24 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 25 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.04 1.04 6.71 -2.39 -0.02 1.02 16 27 H 0.07 2.10 6.66 -2.39 -0.02 2.09 16 28 H 0.05 1.87 6.28 -2.39 -0.01 1.86 16 29 H 0.05 1.29 6.59 -2.38 -0.02 1.28 16 30 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.04 1.73 6.79 -2.39 -0.02 1.72 16 Total: -1.00 -67.32 276.85 2.97 -64.35 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.96 Total: 10.29 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 3.44 Total: -36.48 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.31 Total: -85.93 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -67.32 2.97 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709966194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.374 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds