Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46944 * 240.00016 * 2 1 3 5 5 C 1.50703 * 109.47038 * 174.99908 * 4 2 1 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 N 1.46898 * 109.47355 * 120.00379 * 2 1 3 14 14 C 1.46901 * 110.99682 * 274.99814 * 13 2 1 15 15 H 1.08999 * 112.85389 * 25.33702 * 14 13 2 16 16 C 1.53783 * 113.61863 * 254.13287 * 14 13 2 17 17 C 1.53949 * 87.02315 * 220.04827 * 16 14 13 18 18 H 1.09005 * 113.66532 * 139.93087 * 17 16 14 19 19 C 1.52996 * 113.61762 * 270.80075 * 17 16 14 20 20 C 1.53782 * 87.11168 * 25.36356 * 17 16 14 21 21 H 1.08999 * 113.61551 * 220.08564 * 20 17 16 22 22 C 1.53008 * 113.61521 * 89.18385 * 20 17 16 23 23 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46704 * 299.99838 * 1 2 3 25 25 H 1.08991 * 109.47083 * 59.99845 * 1 2 3 26 26 H 1.09003 * 109.46825 * 55.00232 * 4 2 1 27 27 H 1.08996 * 109.47396 * 294.99805 * 4 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 29 29 H 1.00899 * 111.00404 * 151.04732 * 13 2 1 30 30 H 1.09005 * 113.61163 * 334.57304 * 16 14 13 31 31 H 1.08999 * 113.61122 * 105.46822 * 16 14 13 32 32 H 1.08999 * 109.47340 * 157.53375 * 19 17 16 33 33 H 1.09003 * 109.47256 * 277.53758 * 19 17 16 34 34 H 1.09000 * 109.46874 * 37.53257 * 19 17 16 35 35 H 1.09000 * 109.46668 * 322.50535 * 22 20 17 36 36 H 1.08998 * 109.46472 * 82.50351 * 22 20 17 37 37 H 1.09002 * 109.46890 * 202.50449 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 3.5764 -1.8369 -3.3001 9 14 6.0921 -1.0614 -2.4367 10 1 6.4709 0.1615 -3.1894 11 1 6.6441 -2.2565 -3.1239 12 1 6.6413 -0.9848 -1.0591 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3468 15 1 1.3877 1.0579 2.2606 16 6 3.5131 0.6470 2.7187 17 6 3.0850 0.5097 4.1911 18 1 3.8478 0.0625 4.8286 19 6 2.4958 1.7929 4.7804 20 6 2.0221 -0.4909 3.7078 21 1 1.0621 -0.3864 4.2134 22 6 2.5175 -1.9379 3.6638 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6053 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2057 28 1 2.6097 -1.9053 -3.2592 29 1 2.9174 -1.1205 1.0287 30 1 4.2744 -0.0721 2.4164 31 1 3.7550 1.6690 2.4269 32 1 1.8691 1.5449 5.6370 33 1 3.3042 2.4506 5.0998 34 1 1.8944 2.2972 4.0241 35 1 3.5558 -1.9564 3.3326 36 1 2.4456 -2.3769 4.6588 37 1 1.9041 -2.5110 2.9685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709982126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = -11.944581 kcal Electronic energy + Delta-G solvation = -14674.880116 eV Core-core repulsion = 12451.475145 eV Total energy + Delta-G solvation = -2223.404971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62481 -35.77229 -32.71248 -30.42909 -29.27882 -27.11587 -26.95216 -23.59263 -22.95068 -21.89192 -19.66159 -17.80469 -16.73143 -15.57686 -15.24947 -14.31116 -13.85821 -13.74013 -13.22756 -13.05172 -12.64043 -12.25827 -12.10097 -11.92161 -11.63123 -11.41122 -11.30596 -11.29454 -10.92349 -10.72248 -10.45925 -10.33323 -10.13789 -9.84747 -9.75713 -9.30877 -8.52851 -8.33283 -7.55974 -6.35980 -4.05294 3.42323 3.45335 3.60910 4.53597 4.71640 4.77236 4.90803 5.03027 5.32143 5.44856 5.50228 5.71422 5.73299 5.82708 5.86031 5.92414 5.94818 6.05425 6.14040 6.15136 6.21011 6.28840 6.34794 6.46885 6.55049 6.67071 6.77299 6.82864 6.87318 7.34917 7.45441 8.02102 8.18500 8.31683 8.45199 8.88621 9.67079 11.04665 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.008764 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.758338 B = 3194.200231 C = 3656.415103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.029 0.971 4 C 0.006 3.994 5 C -0.602 4.602 6 H 0.046 0.954 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.075 3.925 15 H 0.085 0.915 16 C -0.163 4.163 17 C -0.116 4.116 18 H 0.071 0.929 19 C -0.132 4.132 20 C -0.098 4.098 21 H 0.067 0.933 22 C -0.126 4.126 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.010 0.990 27 H 0.016 0.984 28 H 0.270 0.730 29 H 0.357 0.643 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 4.264 13.518 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.047 0.953 4 C -0.031 4.031 5 C -0.640 4.640 6 H 0.065 0.935 7 C -0.187 4.187 8 N -0.548 5.548 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.037 4.037 15 H 0.103 0.897 16 C -0.203 4.203 17 C -0.135 4.135 18 H 0.090 0.910 19 C -0.189 4.189 20 C -0.118 4.118 21 H 0.085 0.915 22 C -0.183 4.183 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.179 0.821 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.536 3.569 12.751 13.330 hybrid contribution -0.528 1.110 0.668 1.399 sum -2.064 4.678 13.419 14.360 Atomic orbital electron populations 1.21822 0.96882 1.01233 0.99450 1.21442 0.93029 0.95827 0.91246 0.95305 1.19405 0.96533 0.95524 0.91626 1.22020 0.91928 1.38531 1.11541 0.93542 1.25776 1.06709 0.93490 0.92736 1.70740 1.10490 1.39603 1.33939 0.83555 0.74625 0.76589 0.75545 1.21597 1.20981 1.21537 1.60463 1.34622 1.31216 1.03956 1.22972 0.95000 0.94354 0.91326 0.89723 1.23740 0.99048 1.01641 0.95832 1.22368 0.98612 0.96299 0.96195 0.91018 1.21565 1.00399 0.96519 1.00410 1.22574 0.97684 0.94906 0.96603 0.91459 1.21415 1.01379 0.94862 1.00642 0.92752 0.94366 0.93532 0.97166 0.96579 0.91966 0.82072 0.89895 0.92144 0.92695 0.92834 0.92652 0.92969 0.93782 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.40 37.16 0.35 -2.14 16 2 C 0.09 1.99 2.45 -67.71 -0.17 1.83 16 3 H 0.03 0.64 7.85 -51.93 -0.41 0.23 16 4 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 5 C -0.60 -16.77 8.12 -34.44 -0.28 -17.05 16 6 H 0.05 1.27 7.49 -52.48 -0.39 0.88 16 7 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 8 N -0.91 -27.94 13.65 55.43 0.76 -27.18 16 9 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.67 -13.00 5.37 -98.88 -0.53 -13.53 16 14 C 0.07 1.22 3.40 -66.90 -0.23 0.99 16 15 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 16 C -0.16 -2.52 6.93 -25.83 -0.18 -2.70 16 17 C -0.12 -1.50 4.11 -89.72 -0.37 -1.86 16 18 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 19 C -0.13 -1.46 9.59 37.16 0.36 -1.11 16 20 C -0.10 -1.38 4.11 -89.80 -0.37 -1.75 16 21 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 22 C -0.13 -1.77 8.92 37.16 0.33 -1.44 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.63 7.71 -51.93 -0.40 0.23 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 27 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 28 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 29 H 0.36 7.62 6.57 -39.29 -0.26 7.36 16 30 H 0.08 1.37 7.35 -51.93 -0.38 0.99 16 31 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.63 7.35 -51.93 -0.38 0.25 16 35 H 0.05 0.76 7.35 -51.93 -0.38 0.37 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -28.94 291.29 -7.89 -36.84 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.67 Total: 3.99 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.76 Total: -24.78 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.23 Total: -40.71 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.94 -7.89 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.891 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds