Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46944 * 240.00016 * 2 1 3 5 5 C 1.50703 * 109.47038 * 174.99908 * 4 2 1 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 N 1.46898 * 109.47355 * 120.00379 * 2 1 3 14 14 C 1.46901 * 110.99682 * 274.99814 * 13 2 1 15 15 H 1.08999 * 112.85389 * 25.33702 * 14 13 2 16 16 C 1.53783 * 113.61863 * 254.13287 * 14 13 2 17 17 C 1.53949 * 87.02315 * 220.04827 * 16 14 13 18 18 H 1.09005 * 113.66532 * 139.93087 * 17 16 14 19 19 C 1.52996 * 113.61762 * 270.80075 * 17 16 14 20 20 C 1.53782 * 87.11168 * 25.36356 * 17 16 14 21 21 H 1.08999 * 113.61551 * 220.08564 * 20 17 16 22 22 C 1.53008 * 113.61521 * 89.18385 * 20 17 16 23 23 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46704 * 299.99838 * 1 2 3 25 25 H 1.08991 * 109.47083 * 59.99845 * 1 2 3 26 26 H 1.09003 * 109.46825 * 55.00232 * 4 2 1 27 27 H 1.08996 * 109.47396 * 294.99805 * 4 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 29 29 H 1.00899 * 111.00404 * 151.04732 * 13 2 1 30 30 H 1.09005 * 113.61163 * 334.57304 * 16 14 13 31 31 H 1.08999 * 113.61122 * 105.46822 * 16 14 13 32 32 H 1.08999 * 109.47340 * 157.53375 * 19 17 16 33 33 H 1.09003 * 109.47256 * 277.53758 * 19 17 16 34 34 H 1.09000 * 109.46874 * 37.53257 * 19 17 16 35 35 H 1.09000 * 109.46668 * 322.50535 * 22 20 17 36 36 H 1.08998 * 109.46472 * 82.50351 * 22 20 17 37 37 H 1.09002 * 109.46890 * 202.50449 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2303 -1.1926 -2.3584 8 7 3.5764 -1.8369 -3.3001 9 14 6.0921 -1.0614 -2.4367 10 1 6.4709 0.1615 -3.1894 11 1 6.6441 -2.2565 -3.1239 12 1 6.6413 -0.9848 -1.0591 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3468 15 1 1.3877 1.0579 2.2606 16 6 3.5131 0.6470 2.7187 17 6 3.0850 0.5097 4.1911 18 1 3.8478 0.0625 4.8286 19 6 2.4958 1.7929 4.7804 20 6 2.0221 -0.4909 3.7078 21 1 1.0621 -0.3864 4.2134 22 6 2.5175 -1.9379 3.6638 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6053 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2057 28 1 2.6097 -1.9053 -3.2592 29 1 2.9174 -1.1205 1.0287 30 1 4.2744 -0.0721 2.4164 31 1 3.7550 1.6690 2.4269 32 1 1.8691 1.5449 5.6370 33 1 3.3042 2.4506 5.0998 34 1 1.8944 2.2972 4.0241 35 1 3.5558 -1.9564 3.3326 36 1 2.4456 -2.3769 4.6588 37 1 1.9041 -2.5110 2.9685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709982126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = -28.532019 kcal Electronic energy + Delta-G solvation = -14675.599401 eV Core-core repulsion = 12451.475145 eV Total energy + Delta-G solvation = -2224.124256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85453 -37.50025 -34.78463 -31.69137 -30.59591 -28.97216 -28.24176 -25.20154 -24.63433 -23.11751 -21.38390 -19.06317 -18.84198 -17.01311 -16.58520 -15.80336 -15.66587 -15.10333 -14.86709 -14.53237 -13.80912 -13.77807 -13.37143 -13.25144 -13.06448 -13.01820 -12.80640 -12.66363 -12.58412 -12.49499 -11.99597 -11.91113 -11.66992 -11.34322 -10.94198 -10.74243 -10.63891 -10.55178 -9.09763 -8.67739 -6.37613 1.49804 1.58442 1.75636 2.54639 3.13836 3.42282 3.62412 3.70643 3.86948 4.05753 4.23104 4.46147 4.53433 4.58769 4.61731 4.66100 4.70771 4.78833 4.88853 4.95278 5.06134 5.07162 5.08638 5.11149 5.15445 5.22596 5.32416 5.41580 5.43631 5.56075 5.65057 5.97747 6.18193 6.43002 6.56112 6.65235 7.43668 8.72967 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.008764 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.758338 B = 3194.200231 C = 3656.415103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.101 3.899 3 H 0.020 0.980 4 C 0.011 3.989 5 C -0.606 4.606 6 H 0.049 0.951 7 C -0.037 4.037 8 N -0.938 5.938 9 Si 1.116 2.884 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.064 3.936 15 H 0.089 0.911 16 C -0.168 4.168 17 C -0.100 4.100 18 H 0.082 0.918 19 C -0.130 4.130 20 C -0.092 4.092 21 H 0.080 0.920 22 C -0.124 4.124 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.051 0.949 26 H -0.011 1.011 27 H -0.007 1.007 28 H 0.255 0.745 29 H 0.343 0.657 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 5.178 15.623 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.008 4.008 3 H 0.038 0.962 4 C -0.026 4.026 5 C -0.644 4.644 6 H 0.067 0.933 7 C -0.234 4.234 8 N -0.576 5.576 9 Si 0.938 3.062 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.301 5.301 14 C -0.046 4.046 15 H 0.107 0.893 16 C -0.207 4.207 17 C -0.119 4.119 18 H 0.100 0.900 19 C -0.187 4.187 20 C -0.112 4.112 21 H 0.099 0.901 22 C -0.181 4.181 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.007 0.993 27 H 0.011 0.989 28 H 0.065 0.935 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.141 4.502 14.883 15.591 hybrid contribution -0.698 0.832 0.028 1.086 sum -1.840 5.333 14.911 15.942 Atomic orbital electron populations 1.21723 0.94463 1.01416 1.00911 1.21288 0.94938 0.94517 0.90098 0.96241 1.19313 0.95702 0.94438 0.93187 1.22340 0.93123 1.37692 1.11225 0.93315 1.27303 1.11062 0.92713 0.92362 1.70879 1.09723 1.41662 1.35315 0.82948 0.69470 0.77013 0.76812 1.20137 1.20915 1.19317 1.60540 1.33685 1.31925 1.03983 1.23181 0.95873 0.94504 0.91070 0.89308 1.23709 0.97935 1.00923 0.98156 1.22324 0.98126 0.96843 0.94585 0.89994 1.21574 1.00900 0.95511 1.00728 1.22556 0.98832 0.94857 0.94913 0.90123 1.21386 1.00331 0.94959 1.01424 0.93191 0.91908 0.93045 0.99295 0.98889 0.93523 0.83697 0.91497 0.92395 0.91033 0.91774 0.93140 0.93931 0.91510 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.40 71.98 0.68 -3.88 16 2 C 0.10 4.31 2.45 44.92 0.11 4.42 16 3 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 4 C 0.01 0.58 3.88 29.85 0.12 0.69 16 5 C -0.61 -34.26 8.12 25.60 0.21 -34.06 16 6 H 0.05 2.69 7.49 -2.91 -0.02 2.66 16 7 C -0.04 -2.14 5.46 84.65 0.46 -1.68 16 8 N -0.94 -58.81 13.65 21.45 0.29 -58.52 16 9 Si 1.12 50.77 29.90 68.60 2.05 52.82 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.67 -25.90 5.37 -466.76 -2.50 -28.40 16 14 C 0.06 2.00 3.40 45.44 0.15 2.16 16 15 H 0.09 2.70 7.00 -2.39 -0.02 2.69 16 16 C -0.17 -4.96 6.93 31.18 0.22 -4.74 16 17 C -0.10 -2.31 4.11 -10.21 -0.04 -2.35 16 18 H 0.08 1.77 8.10 -2.38 -0.02 1.75 16 19 C -0.13 -2.45 9.59 71.98 0.69 -1.76 16 20 C -0.09 -2.38 4.11 -10.26 -0.04 -2.42 16 21 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 22 C -0.12 -3.29 8.92 71.98 0.64 -2.65 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.93 7.71 -2.39 -0.02 1.91 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 27 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 28 H 0.26 16.28 7.22 -92.71 -0.67 15.61 16 29 H 0.34 14.84 6.57 -89.69 -0.59 14.25 16 30 H 0.07 2.19 7.35 -2.38 -0.02 2.17 16 31 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.00 7.35 -2.39 -0.02 0.99 16 35 H 0.04 1.19 7.35 -2.39 -0.02 1.17 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.61 7.77 -2.39 -0.02 1.59 16 Total: -1.00 -62.43 291.29 3.55 -58.87 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.52 Total: 21.49 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 3.19 Total: -46.26 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.21 Total: -86.93 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -62.43 3.55 -58.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.342 kcal (2) G-P(sol) polarization free energy of solvation -62.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds