Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 N 1.46903 * 109.47018 * 119.99605 * 2 1 3 14 14 C 1.46893 * 111.00409 * 275.00115 * 13 2 1 15 15 H 1.09006 * 112.84696 * 26.68917 * 14 13 2 16 16 C 1.53776 * 113.61490 * 255.49552 * 14 13 2 17 17 C 1.53779 * 87.07986 * 220.01610 * 16 14 13 18 18 H 1.09007 * 113.61643 * 270.79709 * 17 16 14 19 19 C 1.53003 * 113.61267 * 139.98115 * 17 16 14 20 20 C 1.53778 * 87.08229 * 25.43250 * 17 16 14 21 21 H 1.08995 * 113.61264 * 89.11425 * 20 17 16 22 22 C 1.52995 * 113.61576 * 220.01599 * 20 17 16 23 23 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 24 24 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 25 25 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 27 27 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 28 28 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99744 * 38.95700 * 13 2 1 30 30 H 1.08992 * 113.61791 * 334.56753 * 16 14 13 31 31 H 1.09008 * 113.61279 * 105.47004 * 16 14 13 32 32 H 1.09001 * 109.47203 * 79.50679 * 19 17 16 33 33 H 1.08997 * 109.47142 * 199.50689 * 19 17 16 34 34 H 1.08994 * 109.47005 * 319.50533 * 19 17 16 35 35 H 1.08999 * 109.47461 * 157.49573 * 22 20 17 36 36 H 1.08999 * 109.47706 * 277.49858 * 22 20 17 37 37 H 1.09002 * 109.47062 * 37.50042 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.6839 -1.6884 -1.2274 11 1 6.5872 -1.7614 -3.6490 12 1 6.4856 0.3694 -2.4951 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 1 1.3711 1.0451 2.2718 16 6 3.5102 0.6732 2.6981 17 6 3.1082 0.5281 4.1753 18 1 2.6784 1.4344 4.6019 19 6 4.2054 -0.0788 5.0522 20 6 2.0579 -0.4932 3.7077 21 1 2.4309 -1.5166 3.6695 22 6 0.7193 -0.3741 4.4389 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6055 -0.2618 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 4.0612 -2.2473 -4.0331 29 1 1.4496 -1.4979 1.4101 30 1 4.2801 -0.0313 2.3838 31 1 3.7289 1.6998 2.4039 32 1 4.9386 0.6887 5.3001 33 1 3.7635 -0.4688 5.9691 34 1 4.6956 -0.8887 4.5122 35 1 -0.0693 -0.8119 3.8269 36 1 0.7766 -0.9028 5.3904 37 1 0.4967 0.6774 4.6204 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709982131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = -5.684054 kcal Electronic energy + Delta-G solvation = -14497.613615 eV Core-core repulsion = 12274.480121 eV Total energy + Delta-G solvation = -2223.133494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35593 -35.69296 -32.44696 -30.42504 -29.77249 -27.60251 -27.10459 -23.13470 -22.56639 -21.32904 -19.71214 -18.92201 -16.16520 -15.31096 -14.65752 -14.40178 -14.22889 -13.68268 -13.09637 -13.03446 -12.71088 -12.52440 -12.32362 -11.80999 -11.68380 -11.45030 -11.37386 -11.11346 -10.67820 -10.63196 -10.48758 -10.38925 -9.98477 -9.86352 -9.65660 -9.11017 -8.91671 -8.19252 -7.47223 -5.81892 -3.78839 3.44488 3.47945 3.51601 4.61645 4.72419 4.77336 4.84322 5.19637 5.28876 5.54157 5.55633 5.58265 5.63657 5.71813 5.83066 5.86990 5.92594 5.95184 6.02468 6.05710 6.10698 6.23519 6.32229 6.44476 6.50056 6.68352 6.72595 6.85603 7.13208 7.67194 7.78450 8.13837 8.14655 8.27437 8.67936 9.26499 9.81867 11.30422 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.008704 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.239261 B = 3216.175155 C = 3972.663758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.651 5.651 14 C 0.067 3.933 15 H 0.059 0.941 16 C -0.121 4.121 17 C -0.114 4.114 18 H 0.081 0.919 19 C -0.138 4.138 20 C -0.113 4.113 21 H 0.095 0.905 22 C -0.141 4.141 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.257 0.743 29 H 0.330 0.670 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 3.801 14.325 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.281 5.281 14 C -0.044 4.044 15 H 0.077 0.923 16 C -0.159 4.159 17 C -0.133 4.133 18 H 0.100 0.900 19 C -0.195 4.195 20 C -0.132 4.132 21 H 0.113 0.887 22 C -0.198 4.198 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.204 3.777 13.987 14.838 hybrid contribution 0.042 0.129 0.037 0.140 sum -3.162 3.906 14.024 14.897 Atomic orbital electron populations 1.22569 0.99720 1.01072 1.00444 1.21823 0.89679 0.98103 0.92517 0.91937 1.19100 0.96210 0.95321 0.89780 1.21131 0.91939 1.32648 1.06655 0.92353 1.25011 0.97898 0.96017 0.96121 1.69960 1.35223 1.37003 1.12531 0.86709 0.86565 0.77899 0.77050 1.20413 1.21688 1.20597 1.60690 1.57097 1.08142 1.02167 1.22990 0.96723 0.95261 0.89378 0.92292 1.23093 0.98155 1.01200 0.93450 1.22481 0.96557 0.98273 0.95962 0.90044 1.21682 0.98053 1.00619 0.99193 1.22884 0.95029 0.99541 0.95752 0.88704 1.21734 0.97045 1.01208 0.99859 0.94530 0.92651 0.93115 0.96646 0.96598 0.93367 0.85165 0.89001 0.92470 0.93062 0.93187 0.92365 0.92873 0.92999 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.15 37.16 0.34 -2.75 16 2 C 0.09 1.82 2.40 -67.71 -0.16 1.66 16 3 H 0.06 1.34 7.86 -51.93 -0.41 0.93 16 4 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 5 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.95 13.29 55.43 0.74 -27.21 16 9 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.65 -12.33 6.01 -98.89 -0.59 -12.92 16 14 C 0.07 1.06 3.37 -66.91 -0.23 0.83 16 15 H 0.06 0.92 7.43 -51.93 -0.39 0.54 16 16 C -0.12 -1.88 7.43 -25.92 -0.19 -2.08 16 17 C -0.11 -1.43 3.91 -89.81 -0.35 -1.78 16 18 H 0.08 0.95 7.97 -51.93 -0.41 0.54 16 19 C -0.14 -1.57 9.68 37.16 0.36 -1.22 16 20 C -0.11 -1.48 3.52 -89.81 -0.32 -1.80 16 21 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 22 C -0.14 -1.57 9.71 37.16 0.36 -1.21 16 23 H 0.04 0.55 7.68 -51.93 -0.40 0.15 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.33 5.89 8.32 -39.29 -0.33 5.57 16 30 H 0.09 1.62 8.01 -51.93 -0.42 1.21 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.55 7.95 -51.93 -0.41 0.13 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -30.02 298.91 -8.04 -38.05 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.94 Total: 0.59 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.72 Total: -20.51 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.14 Total: -40.13 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.02 -8.04 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709982131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.369 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds